PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016968-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YB

Protein Properties

Length: 187aa MW: 20916.4 Da PI: 8.0386

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016968-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.5	2.9e-56	38	134	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++eqdr+lPianv+rimkk+lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+atlGf+dy+eplk yl++yr WALNUT_00016968-RA 38 MKEQDRLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMATLGFDDYAEPLKRYLQRYR 128 589************************************************************************************** PP NF-YB 92 elegek 97 elege+ WALNUT_00016968-RA 129 ELEGER 134 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.3E-56	33	153	IPR009072	Histone-fold
SuperFamily	SSF47113	1.73E-41	41	151	IPR009072	Histone-fold
Pfam	PF00808	6.5E-28	44	108	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-20	72	90	No hit	No description
PROSITE pattern	PS00685	0	75	91	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.5E-20	91	109	No hit	No description
PRINTS	PR00615	1.5E-20	110	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MVDSTGGNNS DREGFKYHFA GTAPSVALGT DDDQDAAMKE QDRLLPIANV GRIMKKILPP 60 NAKISKEAKE TMQECVSEFI SFVTGEASDK CHKEKRKTVN GDDICWAMAT LGFDDYAEPL 120 KRYLQRYREL EGERSAQQSK PSSNEDQKNK TTNYGAAETT RKPTVPTTPS LKFNVIDRNN 180 SPVSRRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-46	38	129	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-46	38	129	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835425.1	1e-140	PREDICTED: nuclear transcription factor Y subunit B-1-like
Swissprot	O82248	1e-61	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2I4FUV6	1e-138	A0A2I4FUV6_JUGRE; nuclear transcription factor Y subunit B-1-like
STRING	EMJ02876	3e-84	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-64	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]