PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016900-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 339aa    MW: 37310.9 Da    PI: 8.2057
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016900-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1365109147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  WALNUT_00016900-RA  65 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 109
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1659115IPR009057Homeodomain-like
PROSITE profilePS5129415.40860114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-663115IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1863112IPR006447Myb domain, plants
SMARTSM007175.3E-1164112IPR001005SANT/Myb domain
PfamPF002492.8E-1165109IPR001005SANT/Myb domain
CDDcd001672.16E-867110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVSVSPNPAQ GFYFFDPATM DSPAGPNSLP PPTTTTTGAA SASTASFPDD ANKKVRKPYT  60
ITKSRESWTE QEHDKFLEAL QLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKSGASE  120
HVPPPRPKRK AAHPYPQKAP KNGWDVSVSS QVTSPYQSSS AMLQPAYVYR PDSSSVPGNP  180
ITSSTLSTWS LNSAPVACVS QVTKDDAGLV EPPIANNCCY SSSNESTPRT WPRGEKVDQE  240
DHGKPVRVMP DFAQVYQFIG SVFDPNTTGH LQRLKQMDQV NLETVLLLMK NLAVNLTSPV  300
FEDYKRLLSL NDTDHEKAKF GISCNNLCSD QSHSAILSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837232.10.0PREDICTED: protein REVEILLE 5 isoform X1
SwissprotC0SVG51e-108RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A2I4G0090.0A0A2I4G009_JUGRE; protein REVEILLE 5 isoform X1
STRINGXP_006491181.11e-166(Citrus sinensis)
STRINGXP_006444958.11e-166(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-86MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]