PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016685-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 343aa MW: 36838.7 Da PI: 8.6549

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016685-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	32	91	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalr vP+Ggg+rknkk++ WALNUT_00016685-RA 32 EHGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRSVPIGGGCRKNKKVK 91 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	31	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.115	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MMSPDNIPAK PVTEDDNQGS GSRKTASARP PEHGLKCPRC DSPNTKFCYY NNYSLTQPRH 60 FCKTCRRYWT KGGALRSVPI GGGCRKNKKV KSSSRLSEDS KDSSSSSEIG GLKFFHGLSP 120 AMDFQLGGLP FPRLHPPTTA IYNQFSSFGD VSGNFPAASG TVTTPFTLEP SGNSNNSLMS 180 FNYPLSSTNG GGGGFSAAAV QNTSSSMNVH SGLASSIESL STINQDLHWK LQQQRLAMLF 240 GGENQKDNSV SSVPLENLTQ KPQPIVFQNL EIPKSSEACS VGNSRKEGTS TRDQIATEWF 300 FGNSYGPVTP TPANSGGNGG HGNENSWNGI QTWGDLQQYS TLP

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MMSPDNIPAK PVTEDDNQGS GSRKTASARP PEHGLKCPRC DSPNTKFCYY NNYSLTQPRH  60
FCKTCRRYWT KGGALRSVPI GGGCRKNKKV KSSSRLSEDS KDSSSSSEIG GLKFFHGLSP  120
AMDFQLGGLP FPRLHPPTTA IYNQFSSFGD VSGNFPAASG TVTTPFTLEP SGNSNNSLMS  180
FNYPLSSTNG GGGGFSAAAV QNTSSSMNVH SGLASSIESL STINQDLHWK LQQQRLAMLF  240
GGENQKDNSV SSVPLENLTQ KPQPIVFQNL EIPKSSEACS VGNSRKEGTS TRDQIATEWF  300
FGNSYGPVTP TPANSGGNGG HGNENSWNGI QTWGDLQQYS TLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU338852	1e-100	GU338852.1 Juglans regia microsatellite UFJr3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018815122.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A2I4E6U5	0.0	A0A2I4E6U5_JUGRE; dof zinc finger protein DOF5.7-like
STRING	EOX91892	1e-160	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	8e-61	Dof family protein