PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016655-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 387aa MW: 44118.7 Da PI: 5.1046

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016655-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.6e-52	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+ WALNUT_00016655-RA 7 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYDPWELPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKP 96 79************************99.88***********6666689********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + vg+kk Lvfy+g+ap+gekt+W+mheyrl WALNUT_00016655-RA 97 IGQ--PKPVGIKKALVFYSGKAPRGEKTNWIMHEYRL 131 98..789**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.809	7	156	IPR003441	NAC domain
Pfam	PF02365	2.3E-27	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MASELQLPPG FRFHPTDEEL VMHYLCRKCA SQPIAVPIIA EIDLYKYDPW ELPGMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGQP KPVGIKKALV FYSGKAPRGE 120 KTNWIMHEYR LDVDRSARKK NSLRLDDWVL CRIYNKKGSI EKQQQQQAAI DKKMTMMNDQ 180 EMEDKKPENL TVGGTASAIL PAQTEKANDY MYYDTSDSVP RLHTDSSCSE QVVSPEFASE 240 LDDWVLCRIY NKKGSIEKQQ QQQAAIDKKM TMMNDQEMED KKPENLTVGG TASAILPAQT 300 EKANDYMYYD TSDSVPRLHT DSSCSEQVVS PEFASEVQSE PKYWEKALEF PFNGIDTAID 360 GGFGSQFQSN NQMSPLQDIF MYLQKPF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MASELQLPPG FRFHPTDEEL VMHYLCRKCA SQPIAVPIIA EIDLYKYDPW ELPGMALYGE  60
KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGQP KPVGIKKALV FYSGKAPRGE  120
KTNWIMHEYR LDVDRSARKK NSLRLDDWVL CRIYNKKGSI EKQQQQQAAI DKKMTMMNDQ  180
EMEDKKPENL TVGGTASAIL PAQTEKANDY MYYDTSDSVP RLHTDSSCSE QVVSPEFASE  240
LDDWVLCRIY NKKGSIEKQQ QQQAAIDKKM TMMNDQEMED KKPENLTVGG TASAILPAQT  300
EKANDYMYYD TSDSVPRLHT DSSCSEQVVS PEFASEVQSE PKYWEKALEF PFNGIDTAID  360
GGFGSQFQSN NQMSPLQDIF MYLQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-81	3	162	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00121	DAP	Transfer from AT1G01720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836563.1	1e-180	PREDICTED: NAC domain-containing protein 2-like
Swissprot	Q39013	1e-125	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A2I4FY46	1e-179	A0A2I4FY46_JUGRE; NAC domain-containing protein 2-like
STRING	XP_010095416.1	1e-139	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-126	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]