PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016494-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 934aa MW: 102830 Da PI: 4.4213 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 27 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ ++++v+++G + W+tIa+ ++ gR +kqc++rw+++l WALNUT_00016494-RA 27 KGPWSKEEDQMIIELVNRYGAKKWSTIAEALP-GRIGKQCRERWHNHL 73 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 79 | 121 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ WALNUT_00016494-RA 79 KEPWTQEEEMALIRAHQIYGNK-WAELQKFLP-GRTDNAIKNHWN 121 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.012 | 1 | 21 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-14 | 2 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.105 | 22 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-32 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-18 | 26 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-15 | 29 | 73 | No hit | No description |
Pfam | PF13921 | 7.2E-18 | 30 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 38 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.222 | 78 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 78 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-12 | 81 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 81 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 934 aa Download sequence Send to blast |
MAAYFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDQMIIE LVNRYGAKKW STIAEALPGR 60 IGKQCRERWH NHLNPAINKE PWTQEEEMAL IRAHQIYGNK WAELQKFLPG RTDNAIKNHW 120 NSSVKKKLES YLASGLLEQF QGLPYVEHPS SLSVGMQQSQ VDGVEEAETS ECSRGSLAVV 180 NCFQFDSGTA DAMENVRSEE SDHRKGHNVE HYLLQTAEAP DIKDCQYSSH KLSNVFVDVS 240 EESSGFVGTS EQGKCENESH SKGCIQTQSS AGLNTSATIE NIGSAKMDNL LSESDLLEIT 300 LSEARSLECV FHGNVTEQSN DQDGATIMIN CQSDSQSLAT TRTFALESCA PLKDVVGGIS 360 DFEAIPISSD DFIYVDSLGI DADEKDNCMK LDEAKNAPKL VPVDIFSTVN SDSVQTFSSN 420 DENAKLSNSD EAKVTSKLAP GDVLGLVNSD SMQALPSMDD DARVNTVEQD SGALSYRPLR 480 FPGFDVPFLN FDLITSGVDM QQAYSPFGIR QLLMHPMNFA SPRSLWDSPI HKSTPDAISD 540 KAAKSFTCTT SIMKKRLQEP LSPVEETKGD KEYEKDTNMR TFSLTSTFSS LESILEENGV 600 SAMSICSIDS PVDQKVDFED SIQDKANTDR AFEEEKENIG NLESRISEKD IGSTNSPEKI 660 VKKGTLSINP KSKIDDGTSV LIPTGVLVEC NIDEQLVFSP NRDEHQTTRA LSMAVLSPRG 720 QYVIRLDPKA YRGGNLEPSS LKNENFVAVA STECAPSSQP PETTSGNAGD DADIFSISEE 780 TPNRKRGIES PSAWKSPLFV NTFLPGPRFD MDMTFEDLGY FLSPGMRSYD IGLMRQLNED 840 TTTVFANTWD CLAGDDPVTP SKIVFSGDQN LSGEDNCFLH NEQENIPPSD LAGQCVPDFS 900 GCGTPGKGTD KKFLEHTGAT SFSTPSSYLT KNCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-61 | 1 | 128 | 32 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-61 | 1 | 128 | 32 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018805614.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like isoform X2 | ||||
TrEMBL | A0A2I4DEN6 | 0.0 | A0A2I4DEN6_JUGRE; myb-related protein 3R-1-like isoform X2 | ||||
STRING | VIT_11s0016g03750.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 1e-106 | Homeodomain-like protein |