PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016450-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | CO-like | ||||||||
Protein Properties | Length: 409aa MW: 44449 Da PI: 6.2963 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.2e-06 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ +lC +C + H+ H++ WALNUT_00016450-RA 5 CDFCGDQNSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44 *****************************65677777766 PP | |||||||
2 | zf-B_box | 20.1 | 1.3e-06 | 46 | 76 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 C++++++++ C + ++ lC++C +H WALNUT_00016450-RA 46 LLCERCNSQPALVRCAQERVSLCQNCDWIGH 76 57************************98888 PP | |||||||
3 | CCT | 58.6 | 2.2e-20 | 352 | 394 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a+lRYkeK+k RkFeK++rY+sRKa+A+ R RvKGrFvk WALNUT_00016450-RA 352 RGNAILRYKEKKKARKFEKRVRYASRKARADVRRRVKGRFVKV 394 7789*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.30E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 9.1E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.16E-4 | 47 | 76 | No hit | No description |
PROSITE profile | PS51017 | 14.942 | 352 | 394 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.1E-15 | 352 | 394 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MGYLCDFCGD QNSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLLCER CNSQPALVRC 60 AQERVSLCQN CDWIGHGTST STSTNKRQTI NCYSGCPSAA ELSSIWSFVL DSPSVGESTC 120 EQELGLMSIM ENNAKTALGH SENNTSQNIS SSVELNTVHS LKKCNVWVGS SRPHILDQPA 180 GSSNAFLPKL CCPGIKDPGL CQEDDLYEDF KMDEVDLNIE NYEELFGVAL SHSEELLENG 240 GIGSLFGTKD MSATDSSCKG AVAAEGFSVG LANAMQPTCS TAASADSMIS SKTEPILCLT 300 TMQAHSSLVF SCLTGESSAR DYQDCGASSI LLMGEPPWCS PCPESSVQST NRGNAILRYK 360 EKKKARKFEK RVRYASRKAR ADVRRRVKGR FVKVGDAYDC DPLTQTRSY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833263.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_018833265.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_018833266.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-148 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2I4FNN1 | 0.0 | A0A2I4FNN1_JUGRE; zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
STRING | EOX93573 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-113 | CONSTANS-like 9 |