PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016450-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 409aa    MW: 44449 Da    PI: 6.2963
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016450-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.2e-06544639
            zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        C+ +++++   +C+++  +lC +C  + H+       H++
  WALNUT_00016450-RA  5 CDFCGDQNSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                        *****************************65677777766 PP

2zf-B_box20.11.3e-064676434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                          C++++++++   C + ++ lC++C   +H
  WALNUT_00016450-RA 46 LLCERCNSQPALVRCAQERVSLCQNCDWIGH 76
                        57************************98888 PP

3CCT58.62.2e-20352394143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         R +a+lRYkeK+k RkFeK++rY+sRKa+A+ R RvKGrFvk 
  WALNUT_00016450-RA 352 RGNAILRYKEKKKARKFEKRVRYASRKARADVRRRVKGRFVKV 394
                         7789*************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.30E-6447No hitNo description
SMARTSM003369.1E-9447IPR000315B-box-type zinc finger
CDDcd000219.16E-44776No hitNo description
PROSITE profilePS5101714.942352394IPR010402CCT domain
PfamPF062038.1E-15352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGYLCDFCGD QNSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLLCER CNSQPALVRC  60
AQERVSLCQN CDWIGHGTST STSTNKRQTI NCYSGCPSAA ELSSIWSFVL DSPSVGESTC  120
EQELGLMSIM ENNAKTALGH SENNTSQNIS SSVELNTVHS LKKCNVWVGS SRPHILDQPA  180
GSSNAFLPKL CCPGIKDPGL CQEDDLYEDF KMDEVDLNIE NYEELFGVAL SHSEELLENG  240
GIGSLFGTKD MSATDSSCKG AVAAEGFSVG LANAMQPTCS TAASADSMIS SKTEPILCLT  300
TMQAHSSLVF SCLTGESSAR DYQDCGASSI LLMGEPPWCS PCPESSVQST NRGNAILRYK  360
EKKKARKFEK RVRYASRKAR ADVRRRVKGR FVKVGDAYDC DPLTQTRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833263.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_018833265.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_018833266.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-148COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2I4FNN10.0A0A2I4FNN1_JUGRE; zinc finger protein CONSTANS-LIKE 9-like isoform X1
STRINGEOX935730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-113CONSTANS-like 9