PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00016437-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 196aa MW: 20815.1 Da PI: 5.9406 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.9 | 3.9e-55 | 23 | 118 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqdrflPian+srimkk+lP+nakiskdaketvqecvsefisf+ eas kcqrekrktingddllwa++tlGfe+yvepl++yl+kyre WALNUT_00016437-RA 23 REQDRFLPIANMSRIMKKALPTNAKISKDAKETVQECVSEFISFIIREASVKCQREKRKTINGDDLLWAMTTLGFEEYVEPLEIYLQKYRE 113 89***************************************************************************************** PP NF-YB 93 legek 97 +egek WALNUT_00016437-RA 114 MEGEK 118 ***97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-53 | 17 | 129 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.11E-39 | 25 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-25 | 28 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.7E-19 | 56 | 74 | No hit | No description |
PRINTS | PR00615 | 5.7E-19 | 75 | 93 | No hit | No description |
PRINTS | PR00615 | 5.7E-19 | 94 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MADLDNELGG HNNNNANNDF SSREQDRFLP IANMSRIMKK ALPTNAKISK DAKETVQECV 60 SEFISFIIRE ASVKCQREKR KTINGDDLLW AMTTLGFEEY VEPLEIYLQK YREMEGEKSS 120 VGRQGEKDGG DGVAACGGGT GGVVSFGTSD NGGFNGVGGF YGGMYGGVMG HHHGHVYGSG 180 GSPHVGIGGS VIGKGG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 5e-45 | 23 | 113 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 5e-45 | 23 | 113 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833238.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 3e-67 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2I4FNN0 | 1e-141 | A0A2I4FNN0_JUGRE; nuclear transcription factor Y subunit B-3-like | ||||
STRING | VIT_19s0015g00440.t01 | 8e-82 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-69 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
---|---|---|---|
|