PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016409-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 34122.7 Da PI: 8.3372 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.6e-19 | 107 | 157 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+f+tae Aa a+++a+ kl+ge WALNUT_00016409-RA 107 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTFDTAEAAAYAYDRAACKLRGE 157 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-21 | 106 | 166 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-22 | 107 | 165 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-39 | 107 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.866 | 107 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 107 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-13 | 108 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MDTSRDHNLP LAFTDCADIR SSLSQLILTG GTNTLDSIFS RCDSSNTITS PIFEPLGSSV 60 YLRQRDLLQK FCQESKANGA FTRSSAAYPL QSSVCSSAFI NPYKKKLYRG VRQRHWGKWV 120 AEIRLPQNRM RVWLGTFDTA EAAAYAYDRA ACKLRGEYAR LNFPNLTDPS VLGFGDCTRL 180 NALKSSVDSK IQAICQKVKR ERAKKNVKKC STKVDANGSE IEKAMKVGPS SSSSSLSLRV 240 KPLALPDSWG SDLLSSEVSE DEFLKCEKSP SSVSTECPMA PAKEPETEGC SLETMPSFDP 300 ELIWEVLAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 104 | 164 | 2 | 63 | ATERF1 |
3gcc_A | 2e-20 | 104 | 164 | 2 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018815537.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF061-like | ||||
Swissprot | Q9C7W2 | 5e-66 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A2I4E809 | 0.0 | A0A2I4E809_JUGRE; ethylene-responsive transcription factor ERF061-like | ||||
STRING | XP_006439361.1 | 1e-118 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 8e-62 | ERF family protein |
Publications ? help Back to Top | |||
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