PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016379-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 299aa    MW: 33664.8 Da    PI: 4.6135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016379-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-072055237
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                         +W++eEd++l+ ++k++G  +W+  ++  g+++++
  WALNUT_00016379-RA 20 ASWSPEEDQKLKAYIKRYGIWNWNQMPEASGLTLSG 55
                        58*****************99****99999977776 PP
2Myb_DNA-binding271e-081211442347
                         -HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                         +W++Ia++++ gRt++++k++w+ +
  WALNUT_00016379-RA 121 RWSAIAAKLP-GRTDNEIKNYWHAH 144
                         6*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.81714145IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-81548IPR009057Homeodomain-like
SuperFamilySSF466891.31E-101671IPR009057Homeodomain-like
SMARTSM007171.2E-1118147IPR001005SANT/Myb domain
CDDcd001678.09E-42147No hitNo description
SuperFamilySSF466891.31E-1099141IPR009057Homeodomain-like
CDDcd001674.63E-6121145No hitNo description
PfamPF002491.5E-6121144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12121146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVMMMLKTSD GEKMPGRSRA SWSPEEDQKL KAYIKRYGIW NWNQMPEASG LTLSGETSAM  60
KTKKLYLSGM NCWEIEDGKA KAFRLQLNPN VEDIVKKEKS GSSKLQQYLV MSALLSSTSF  120
RWSAIAAKLP GRTDNEIKNY WHAHLKKRSK NMNSSSTTTS ELVGTSEDVE ANKNDSSGNQ  180
DLLISDSPKV PDMDGIKGIP TSLQINMSTN DIVSSSSSTD PPVEDVLNQY MIDQDEINFS  240
SSNASEIIQS IWELPYFSFQ DIFMPDTDPG FMAPTTARWH QESMYPDVCY DAGYDFWVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018854903.11e-114PREDICTED: transcription factor MYB48-like
TrEMBLA0A2I4HFH51e-112A0A2I4HFH5_JUGRE; transcription factor MYB48-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-23myb domain protein 14