PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016378-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 21036.2 Da PI: 4.0947 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 11 | 34 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia++++ gRt++++k++w+ + WALNUT_00016378-RA 11 RWSAIAAKLP-GRTDNEIKNYWHAH 34 4*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.417 | 1 | 39 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-7 | 10 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 11 | 34 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.68E-7 | 11 | 35 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 11 | 36 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSALQSSIYF RWSAIAAKLP GRTDNEIKNY WHAHLKKLSK NISSSTTLSE LVGTSEEVEA 60 NKNDSSGNQD LLLISDSPKV PNMDGIKGIP TSLQIHMSTN DIVSSSSSTD PPVEDVSNQY 120 MIDQDEINFS SSNSSEIIRG IWELPYFSFQ DIFMPERDPG FMAPTTASCQ QEPMYSDVCN 180 DAGYDFWVD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018854903.1 | 1e-122 | PREDICTED: transcription factor MYB48-like | ||||
TrEMBL | A0A2I4HFH5 | 1e-121 | A0A2I4HFH5_JUGRE; transcription factor MYB48-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 4e-15 | myb domain protein 14 |