PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016376-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 19820.8 Da PI: 4.3078 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1.1e-08 | 11 | 34 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia++++ gRt++++k++w+ + WALNUT_00016376-RA 11 RWSAIAAKLP-GRTDNEIKNYWHAH 34 4*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.719 | 1 | 39 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.77E-8 | 10 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-6 | 11 | 34 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.54E-7 | 11 | 35 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 11 | 36 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MSALLSSIYF RWSAIAAKLP GRTDNEIKNY WHAHLKKHSK NNSSSTTISE LVGTSEEVEA 60 NKNDSSGNQD LQLISDSPKV PNMDGIKGIP TSLQIYMSTN DIVSSSSSTD PPVEDARNQY 120 TIDQDEINFS SSNASEIIQS IWELPYFSFQ DIFMPETDPG FMAPTTARCH QEPMYSDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018854903.1 | 1e-119 | PREDICTED: transcription factor MYB48-like | ||||
TrEMBL | A0A2I4HFH5 | 1e-117 | A0A2I4HFH5_JUGRE; transcription factor MYB48-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 2e-11 | myb domain protein 15 |