PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016349-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 325aa MW: 34488.5 Da PI: 8.9524

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016349-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	57	114	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ WALNUT_00016349-RA 57 QNNLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKS 114 67899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.9E-32	58	114	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	60	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MIQELLGGAG LIAGERKISP KGGVLQGIPS SSSPVPSSSS SSTTTITTTT TSNSESQNNL 60 RCPRCDSPNT KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKSPAIPAS 120 IGKSSSGKMK TISCEIGRLG LGGGLDPELP SGPILWGSPQ NSHLLALLRS TQNPNPNHLS 180 NSVNVKEEAG NMGGSHMIMT EPAFAHGGLN VRTLGMDPLG QVPSLGLCSS FWRNNQHQGQ 240 QQNGFVIGEV QNGGIQELYQ RLRSPNNNYY GDHHHSPVVL NNLASSSSSS PSILESASLA 300 GGELGINCNP AFSWSDLHTT NGAYP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857257	1e-30	DQ857257.1 Glycine max Dof7 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018856693.1	0.0	PREDICTED: dof zinc finger protein DOF4.1-like
TrEMBL	A0A2I4HKK8	0.0	A0A2I4HKK8_JUGRE; dof zinc finger protein DOF4.1-like
STRING	POPTR_0007s11620.1	1e-125	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	5e-33	Dof family protein