PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016225-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 444aa    MW: 49578.5 Da    PI: 5.7446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016225-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.21.4e-89424371373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 
                         l++lL++cA a++++d +laq++++ l++ as+ gdp+qRl++ f++AL +r +r  +++++   +s+ +    ++ +++++l  ++++ P
  WALNUT_00016225-RA  42 LEKLLIHCASALETNDVTLAQQVMWVLNNVASSVGDPNQRLTSWFLRALISRASRVYPTTMNFDGSSTIP----KRLMSVTELagYVDLIP 128
                         5799***************************************************666665444333333....44444444466****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                         +++f++ + N+aIl+a++g  rvHi+Df+i++++QWp+L++aLa+RpegppslRiT+ +s  ++    + ++ee+g rL +fA+  +vpfe
  WALNUT_00016225-RA 129 WHRFGFCASNSAILKAIQGFPRVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSSRPPVpplLNISTEEVGLRLGNFAKYRDVPFE 219
                         *********************************************************9998877999999********************* PP

                GRAS 178 fnvl....................vakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvv 240
                         f+v+                         e++     ++++L+++++Eal++n+++ l +l de+  +++    rd++++lvk+l+P+++v
  WALNUT_00016225-RA 220 FHVFdnspstalgeimckesasfhF----ESIlshlnNPSMLNLREDEALVINCQHWLRYLSDEPKGSPHgasLRDTFINLVKGLNPQIIV 306
                         ****999999999987666544422....22255557999***********************99988877779***************** PP

                GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                         vv++++d++++s+  r++ +++y +  +d+le+ lp++s++ri +E   +g +i+n+++ eg++r+er e+  k ++r ++aG+ ++p+ e
  WALNUT_00016225-RA 307 VVDEDSDLSASSLTSRITTCFNYLWIPYDALETFLPKDSSQRIEYESD-IGHKIENIISFEGFQRIERLESGIKLSQRWKNAGYLNIPFCE 396
                         ************************************************.****************************************** PP

                GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         +++k++++ll +++  g+ +++e++ lvl+Wk+++ v+++aW
  WALNUT_00016225-RA 397 ETVKEVRALLDEHA-SGWGMKKEEDMLVLTWKGHNSVFATAW 437
                         **************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.94516419IPR005202Transcription factor GRAS
PfamPF035144.7E-8742437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MKAELKGNTS VSLQSPTLFD THQSPLSGAL NGCLGSLDGA CLEKLLIHCA SALETNDVTL  60
AQQVMWVLNN VASSVGDPNQ RLTSWFLRAL ISRASRVYPT TMNFDGSSTI PKRLMSVTEL  120
AGYVDLIPWH RFGFCASNSA ILKAIQGFPR VHILDFSITH CMQWPTLIDA LAKRPEGPPS  180
LRITVPSSRP PVPPLLNIST EEVGLRLGNF AKYRDVPFEF HVFDNSPSTA LGEIMCKESA  240
SFHFESILSH LNNPSMLNLR EDEALVINCQ HWLRYLSDEP KGSPHGASLR DTFINLVKGL  300
NPQIIVVVDE DSDLSASSLT SRITTCFNYL WIPYDALETF LPKDSSQRIE YESDIGHKIE  360
NIISFEGFQR IERLESGIKL SQRWKNAGYL NIPFCEETVK EVRALLDEHA SGWGMKKEED  420
MLVLTWKGHN SVFATAWVPN GLED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-531644066475Protein SHORT-ROOT
5b3h_B7e-541644012421Protein SHORT-ROOT
5b3h_E7e-541644012421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846409.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A2I4GR810.0A0A2I4GR81_JUGRE; scarecrow-like protein 32
STRINGEOX992080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-118GRAS family protein