PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016110-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 397aa    MW: 44648.9 Da    PI: 8.0047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016110-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08134154526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ ++r G C++Gd+C FaHg
  WALNUT_00016110-RA 134 VCPEYRR-GGCSRGDSCEFAHG 154
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.26E-5128158IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206130156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5133156IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6134154IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287164188IPR000571Zinc finger, CCCH-type
SMARTSM003562.4164187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSSSVCAEQH KLHTSHQLLS SKKQLKNIDI PPRKLLGRRL IPTQEAEMYF SDSPRFSSSL  60
DESTLLRKFL PYNGGDDDSD DSDPYSSDHF RMFEFKVRRC TRSRSHDWTD CPFAHPGEKA  120
RRRDPRRFHY SGQVCPEYRR GGCSRGDSCE FAHGVFECWL HPARYRTEAC KDGKNCKRKV  180
CFFAHTPRQL RILPLNSQNS SPTELPCKKK FLKSSSSNHC CLFCHCATSS PTSTLLGMSH  240
LSPPLSPPLS PVKQRSINGL SPISRYTDRF VSSELSGTGG MHQLNPGVPS YKDVLTELMS  300
SFEAMNFSEE ASPLSSKSPN VPWVDVSFNS EDQPQFILSP STPSPYGSEN FFSGNCSSKS  360
FVDDGGNNND NNKNKVNVEN PWSCSDPDLG WVNELLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814866.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA16e-93C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2I4E6330.0A0A2I4E633_JUGRE; zinc finger CCCH domain-containing protein 2-like
STRINGPOPTR_0017s04510.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-87C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]