PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015959-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 395aa MW: 43406.1 Da PI: 8.3212

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015959-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.8	3.7e-31	225	280	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF+ a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ WALNUT_00015959-RA 225 KQRRNWSPELHRRFLYALQQLGGSQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 280 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-28	222	283	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.295	222	282	IPR017930	Myb domain
SuperFamily	SSF46689	8.96E-18	223	283	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-26	225	280	IPR006447	Myb domain, plants
Pfam	PF00249	9.6E-7	227	278	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDYYPEKMQH RGGLGFREYV KALEEERRKI QVFQRELPLC LELVTQAIEA CRQQYSGTTT 60 ENNLHGQSES SEQTTSNDVP PVFEEFFPIK RSSSSDDEEE EHQSHKNKKE KLISNDSKKK 120 SDWLRSVQLW NNPTSDPQPK EDVPRKATVM EVKRNGGGGG AFQPFQREKS AAVSNASEGK 180 APSSLAPEPE PVAAAATTSS SVETATGGGG ENDRREQKEG QAQRKQRRNW SPELHRRFLY 240 ALQQLGGSQA ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPSIHN NGNQQPPQVV 300 VVGGIWMPAP AEYAAVSASG DIACSVAAAN GIYAPVAAPP PAVQQASTSQ IQRLPLKQSQ 360 PPQSEERVSH SGKRACSDSP ATSSSTHTTT TSPVF

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDYYPEKMQH RGGLGFREYV KALEEERRKI QVFQRELPLC LELVTQAIEA CRQQYSGTTT  60
ENNLHGQSES SEQTTSNDVP PVFEEFFPIK RSSSSDDEEE EHQSHKNKKE KLISNDSKKK  120
SDWLRSVQLW NNPTSDPQPK EDVPRKATVM EVKRNGGGGG AFQPFQREKS AAVSNASEGK  180
APSSLAPEPE PVAAAATTSS SVETATGGGG ENDRREQKEG QAQRKQRRNW SPELHRRFLY  240
ALQQLGGSQA ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPSIHN NGNQQPPQVV  300
VVGGIWMPAP AEYAAVSASG DIACSVAAAN GIYAPVAAPP PAVQQASTSQ IQRLPLKQSQ  360
PPQSEERVSH SGKRACSDSP ATSSSTHTTT TSPVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-13	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-13	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-13	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-13	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-13	225	278	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018823706.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	9e-97	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2I4EWD1	0.0	A0A2I4EWD1_JUGRE; myb family transcription factor EFM-like
STRING	XP_009356299.1	1e-144	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	8e-81	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]