PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015921-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 494aa MW: 55393.6 Da PI: 6.3984 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.7e-11 | 313 | 356 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri++++++Lr+l+Pk + K++ +iL A+ YI++L+ WALNUT_00015921-RA 313 VTERNRRNRIKDGLFTLRSLVPKiS------KMDRTAILGDAIGYIQELE 356 57*********************66......****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.0E-21 | 13 | 162 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 2.52E-10 | 304 | 360 | No hit | No description |
SuperFamily | SSF47459 | 1.14E-15 | 304 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.176 | 306 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 312 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-16 | 313 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-9 | 314 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MEDALKGLET LVEWLRPLAQ TRAWEYCVVW KLGDDPSRFI EWIGCCCSGG VDGDENVKEE 60 PGEEHHSSPL CRDVHFEHPM RTKACQALAQ LPSSMPLYSG FHGEVVISNQ PRWIFSDANS 120 SNSATSNDSL GTQVLIPVVG GLVELFATEH IPKDQKFIEL ITAQCTISFD QEAMSAWSYA 180 NPNLSGNHLD PVREDYLPNW PLPLHLPSLN PRIQALPPVI HSSSYSCVDR SSSGSNPSHE 240 YPSLDLDSCQ ISLHGAINQS IGKSSGSKKA KYSQCSLKRR TGSIANGRNM VENDETKVIK 300 KQEREQYHSK NLVTERNRRN RIKDGLFTLR SLVPKISKMD RTAILGDAIG YIQELEEEVK 360 QLQDELMEMN EEDSRKNESE LKISTSDQIQ GSATTPLPPT QRNQGLSSSG EKKKTEVQVE 420 VNQISQRDFL IKFFCEHKRG GFSRLMESLH LLGLQVADAN ITTFYGKVLN ILKVEAKKDI 480 QLKKLRSSLI ELTN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018815047.1 | 0.0 | PREDICTED: transcription factor bHLH90 | ||||
TrEMBL | A0A2I4E6M2 | 0.0 | A0A2I4E6M2_JUGRE; transcription factor bHLH90 | ||||
STRING | cassava4.1_031741m | 1e-163 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12265 | 30 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 3e-48 | bHLH family protein |