PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015814-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28354.4 Da PI: 9.3006 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl ey++ WALNUT_00015814-RA 9 KLIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVGLIVFSHKGKLSEYAT 59 569**********************************************86 PP | |||||||
2 | K-box | 81.6 | 1.8e-27 | 79 | 168 | 5 | 93 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 + + ++++ + +++ e+++Lk++ie Lqr++R++lG+dLesLs+keLq+LeqqL+ +lk+iRskK++ + eq + l kk ke ++++ a WALNUT_00015814-RA 79 QVVGsTDSEFQGNWTMEFSRLKAKIELLQRNHRRYLGDDLESLSFKELQNLEQQLDVALKHIRSKKEKTIQEQNSILAKKIKEKEKITVA 168 4444355566779*******************************************************************9998887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.389 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.11E-40 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.944 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.0E-21 | 89 | 164 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGRVQMKL IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVGLIVFSH KGKLSEYATG 60 SCMENILERY ESYSYAEKQV VGSTDSEFQG NWTMEFSRLK AKIELLQRNH RRYLGDDLES 120 LSFKELQNLE QQLDVALKHI RSKKEKTIQE QNSILAKKIK EKEKITVAQQ ARWEQQNLHG 180 PDGSSSTFLL PQPLPCLNIG GTNYQEDRSE MRRNVELDLT LLNQFIPVTT DALPRELIRE 240 QRYNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018852402.1 | 1e-151 | PREDICTED: LOW QUALITY PROTEIN: truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-104 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A2I4H8B9 | 1e-150 | A0A2I4H8B9_JUGRE; LOW QUALITY PROTEIN: truncated transcription factor CAULIFLOWER A-like | ||||
STRING | evm.model.supercontig_1.162 | 1e-110 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-83 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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