PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00015773-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26371.6 Da PI: 7.9272 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 4e-16 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d s ++ r +lg+f++aeeAa a ++a++ l+g WALNUT_00015773-RA 49 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDSAEEAALAFDKAARLLRG 98 799******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.26E-31 | 48 | 106 | No hit | No description |
Pfam | PF00847 | 6.4E-10 | 49 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-28 | 49 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.257 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-32 | 49 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-19 | 49 | 107 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.8E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MDSLEFPYEP EMYSCKNHAP TPLETEKIHG QEEKVSMKLP KRGNSNGKRY LGVRQRPSGR 60 WVAEIKDSSQ KLRLWLGTFD SAEEAALAFD KAARLLRGRN AKTNFPCHGI VGTHEENCSL 120 LGKNPRLFRL LQHAIMKNHA RSSSLYPPII SWENQNIPGD KVQLDSSYFD VLVEETIVCS 180 SSSASESGSS CGFDHDRNKL SQLSFGSSKV YSSVFVAPSF SASLGQAGEH QKDFQDA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 45 | 106 | 1 | 63 | ATERF1 |
3gcc_A | 2e-16 | 45 | 106 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874740.1 | 1e-120 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A2I4HPL7 | 1e-104 | A0A2I4HPL7_JUGRE; ethylene-responsive transcription factor LEP-like | ||||
STRING | EOY22247 | 2e-84 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-16 | related to AP2 11 |