PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015734-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 359aa MW: 39785.8 Da PI: 6.6308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015734-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.6e-14	172	218	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L WALNUT_00015734-RA 172 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 218 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-11	172	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-15	173	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-15	173	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.75E-5	182	221	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.2E-5	254	305	No hit	No description
CDD	cd04873	2.20E-6	254	332	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MCGKKLEEDR GECSQTVDNI NMIQSFQEQL FHQQQQQIML QHQQQNSDIY GGGRGLIFPQ 60 VSPISLQPWP LPPVHAFSPA GHFATNPVRD HHDPLNIVPP TPSSFAGLFN RRPPPDHLQF 120 AYDDHGPSSD HLRIISDTLV PQPGSAPFGL QAELGKMTAQ EIMDAKALAA SKSHSEAERR 180 RRERINNHLA KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAETNP VPTEVDELTV 240 DTSDEDGKFV IKASLSCEDR SDLLPDLIKT LKSLRLRTLK AEITTLGGRV KNVLLVSGDE 300 DSISSSTSGE KQQQQQQRHC ISSIEEALKA VMEKTAGDES SSGSVKRQRT TNINILEHS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MCGKKLEEDR GECSQTVDNI NMIQSFQEQL FHQQQQQIML QHQQQNSDIY GGGRGLIFPQ  60
VSPISLQPWP LPPVHAFSPA GHFATNPVRD HHDPLNIVPP TPSSFAGLFN RRPPPDHLQF  120
AYDDHGPSSD HLRIISDTLV PQPGSAPFGL QAELGKMTAQ EIMDAKALAA SKSHSEAERR  180
RRERINNHLA KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAETNP VPTEVDELTV  240
DTSDEDGKFV IKASLSCEDR SDLLPDLIKT LKSLRLRTLK AEITTLGGRV KNVLLVSGDE  300
DSISSSTSGE KQQQQQQRHC ISSIEEALKA VMEKTAGDES SSGSVKRQRT TNINILEHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836098.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_018836107.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-101	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2I4FWT8	0.0	A0A2I4FWT8_JUGRE; transcription factor bHLH30-like
STRING	cassava4.1_010668m	1e-166	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-83	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]