PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015729-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 485aa MW: 53672.7 Da PI: 9.737

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015729-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	311	366	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ WALNUT_00015729-RA 311 KQRRNWSPELHKRFLNALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 366 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-28	308	369	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.919	308	368	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-17	310	369	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-27	311	366	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	313	364	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MALGKVEKPH ISISRIQEDS VGFSLRPWKP EIPNSCLRSQ IYIILWMCFR QNTFRCWGDY 60 IISSRPKRFA SETHNFTNGL SYFPSLSLFL NEKMQHHGGL SVQKYVKALE DELRKIQVFR 120 RELPLCLELV TQAIEACRQQ LSGTTTENNS HGQSESSEQT TSNDVPPVFE EFFPIKRSAS 180 SDDDNEEHHS HEANTETVIR NDSKKKSDWL RSVQLWNNPT SDPRPKEDVP RKATDLKRNG 240 GGGGGGAFQP FQREKSVGKS SASEGKTPSS VAREAAPAVG VATTSSSAVT ATGGSDGNDR 300 REQREGQSER KQRRNWSPEL HKRFLNALQQ LGGSHAATPK QIRELMKVDG LTNDEVKSHL 360 QKYRLHTRRP SPSIHNNGNP QQPQVVVVGG IWMPAPDYAA AMAASGEASG VAAANGIYAP 420 VAAPPPPPAV QQESSSQKVQ RLQHKECRPS KSQSEERFSH SGKRARSDSP ATSSSTHTTT 480 TFPVF

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MALGKVEKPH ISISRIQEDS VGFSLRPWKP EIPNSCLRSQ IYIILWMCFR QNTFRCWGDY  60
IISSRPKRFA SETHNFTNGL SYFPSLSLFL NEKMQHHGGL SVQKYVKALE DELRKIQVFR  120
RELPLCLELV TQAIEACRQQ LSGTTTENNS HGQSESSEQT TSNDVPPVFE EFFPIKRSAS  180
SDDDNEEHHS HEANTETVIR NDSKKKSDWL RSVQLWNNPT SDPRPKEDVP RKATDLKRNG  240
GGGGGGAFQP FQREKSVGKS SASEGKTPSS VAREAAPAVG VATTSSSAVT ATGGSDGNDR  300
REQREGQSER KQRRNWSPEL HKRFLNALQQ LGGSHAATPK QIRELMKVDG LTNDEVKSHL  360
QKYRLHTRRP SPSIHNNGNP QQPQVVVVGG IWMPAPDYAA AMAASGEASG VAAANGIYAP  420
VAAPPPPPAV QQESSSQKVQ RLQHKECRPS KSQSEERFSH SGKRARSDSP ATSSSTHTTT  480
TFPVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-13	311	364	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	311	364	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	311	364	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	311	364	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836051.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	2e-92	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2I4FWM5	0.0	A0A2I4FWM5_JUGRE; myb family transcription factor EFM-like
STRING	cassava4.1_009038m	1e-140	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	4e-79	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]