PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015719-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LFY
Protein Properties Length: 475aa    MW: 53396.6 Da    PI: 6.8959
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015719-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY369.26.6e-11312651280
             FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmk 91 
                         mdp+ f+aslfkwdpr ++ +pp+rlle  a+++a+++aa +   r+l +le+lf+ayG+ry+t+a+iaelGftvstL+dmkdeeldd+m+
  WALNUT_00015719-RA   1 MDPDPFTASLFKWDPRGVV-PPPNRLLEAVAAPAAAATAAYSLRPRELGGLEDLFQAYGIRYYTAARIAELGFTVSTLLDMKDEELDDMMN 90 
                         9**************9776.88999999998888888888888888899****************************************** PP

             FLO_LFY  92 slseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkse 182
                         sls+ifr+dllvGeryGikaavraerrrl+eee  ++rr+l ++ +++aldalsqeglseepvq+eke +gsgg+g  ++e+v+++     
  WALNUT_00015719-RA  91 SLSQIFRCDLLVGERYGIKAAVRAERRRLDEEE--SRRRHLSADTTTNALDALSQEGLSEEPVQQEKEVVGSGGGG--TWEVVGER----- 172
                         *******************************87..7888766777777************************9999..99999875..... PP

             FLO_LFY 183 eekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiaker 273
                            +k++++k+ rk   + +  +d++  e++d+ + +++ +g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iaker
  WALNUT_00015719-RA 173 ---RKQRRRKSLRK-VVD-VDYDDNEGAEDDDNGNGNGNGGGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKER 258
                         ...23311122222.222.222344444444444445556678************************************************ PP

             FLO_LFY 274 GekcPtk 280
                         GekcPtk
  WALNUT_00015719-RA 259 GEKCPTK 265
                         ******9 PP
2FLO_LFY4126.7e-126266461193386
             FLO_LFY 193 qkrkkkkelkse.ededeeeeededeeg.sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkv 281
                         ++rk+ ++++    d++e  e+d++++g ++ +g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkv
  WALNUT_00015719-RA 266 RRRKSLRKVVDVdYDDNEGAEDDDNGNGnGNGGGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKV 356
                         44444444433323333333333333431445677******************************************************** PP

             FLO_LFY 282 tnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPt 372
                         tnqvfryakkagasyinkPkmrhYvhCYalhc+de  sn+lrrafkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvPt
  WALNUT_00015719-RA 357 TNQVFRYAKKAGASYINKPKMRHYVHCYALHCIDEGVSNTLRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPT 447
                         ******************************************************************************************* PP

             FLO_LFY 373 kLrqLChlerskas 386
                         kLrqLCh+er++a+
  WALNUT_00015719-RA 448 KLRQLCHAERNNAT 461
                         ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.1E-1231267IPR002910Floricaula/leafy protein
PfamPF016981.2E-123265460IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDPDPFTASL FKWDPRGVVP PPNRLLEAVA APAAAATAAY SLRPRELGGL EDLFQAYGIR  60
YYTAARIAEL GFTVSTLLDM KDEELDDMMN SLSQIFRCDL LVGERYGIKA AVRAERRRLD  120
EEESRRRHLS ADTTTNALDA LSQEGLSEEP VQQEKEVVGS GGGGTWEVVG ERRKQRRRKS  180
LRKVVDVDYD DNEGAEDDDN GNGNGNGGGS ERQREHPFIV TEPGEVARGK KNGLDYLFHL  240
YEQCRDFLIQ VQNIAKERGE KCPTKRRRKS LRKVVDVDYD DNEGAEDDDN GNGNGNGGGS  300
ERQREHPFIV TEPGEVARGK KNGLDYLFHL YEQCRDFLIQ VQNIAKERGE KCPTKVTNQV  360
FRYAKKAGAS YINKPKMRHY VHCYALHCID EGVSNTLRRA FKERGENVGA WRQACYKPLV  420
AIAARQGWDI DAIFNAHPRL SIWYVPTKLR QLCHAERNNA TASSSVSGGG DHMPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1082094752194PROTEIN LEAFY
2vy2_A1e-1082094752194PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171178RRKQRRRK
2174179QRRRKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1948360.0GU194836.4 Juglans regia LEAFY-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845868.11e-168PREDICTED: floricaula/leafy homolog isoform X1
RefseqXP_018845869.11e-168PREDICTED: floricaula/leafy homolog isoform X2
SwissprotO040641e-131FLLH_POPTR; Floricaula/leafy homolog
TrEMBLQ6EEV80.0Q6EEV8_CITSI; LEAFY
STRINGPOPTR_0015s11820.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-107floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]