PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015532-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 356aa    MW: 40239.6 Da    PI: 10.3583
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015532-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.4e-17138224195
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v +  +l lp kf+e+h  +k+   +++l de+  ++e ++   +k+ +  l++GW+ F+ +++L++gD +vF+l + ++f 
  WALNUT_00015532-RA 138 FVKSMVRSHVYSCFWLGLPSKFCEDHL-PKT-LLDMVLVDEHDVEFEATY--IGKRTG--LSGGWRAFALDHKLDDGDALVFELFEPTRF- 221
                         89**********************995.444.459***************..555544..***********************8765666. PP

                         .EEE CS
                  B3  92 lvvk 95 
                          ++ 
  WALNUT_00015532-RA 222 -KIY 224
                         .444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-19130227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-21133226IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-25136227No hitNo description
PROSITE profilePS5086311.476138229IPR003340B3 DNA binding domain
PfamPF023626.1E-15138224IPR003340B3 DNA binding domain
SMARTSM010191.7E-20138232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAKGRISNKY EAARNQQVEL NKKKFQDLGI LKTSKSLAAL SNSEKKSKQH SPKPKSKTTC  60
VSEPRRSTRA RNPVPSYRDD VGIDLPPLRK RSRVSNSWGS YLARPLDEVR EASQEERDRA  120
FEVALELQSK LESGSPSFVK SMVRSHVYSC FWLGLPSKFC EDHLPKTLLD MVLVDEHDVE  180
FEATYIGKRT GLSGGWRAFA LDHKLDDGDA LVFELFEPTR FKIYIVKAFP VSVQEQSEDT  240
MNKEGISAAQ TTSKTGTKRD LQPNRTQTSR KAVVNANNEL AHLQKLQPES ETNSEDKSRD  300
ENLRKNGFGS QRIQKKGKSA GSSEIKKHEI VENTDRCASG RTRKKPAPKL LRKKVY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340353RTRKKPAPKLLRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835665.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_018835666.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_018835667.10.0PREDICTED: putative B3 domain-containing protein At5g58280
TrEMBLA0A2I4FVJ30.0A0A2I4FVJ3_JUGRE; putative B3 domain-containing protein At5g58280
STRINGXP_008239059.11e-111(Prunus mume)
STRINGVIT_06s0004g08270.t011e-112(Vitis vinifera)
STRINGXP_007142002.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-66B3 family protein