PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015455-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25347.1 Da PI: 7.2418 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134 | 6e-42 | 74 | 173 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C ++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+ WALNUT_00015455-RA 74 PCAACKILRRRCGEKCVLAPYFPPTHPLKFTIAHRVFGASNIIKFLQEIPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQ 164 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e WALNUT_00015455-RA 165 AQLAKAQAE 173 *****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.813 | 73 | 174 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-42 | 74 | 171 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEYKGKAMTP QPTPITVSPP FSSSPSSSLS PPQSSPSLSP PSKSSPFFPS SSVQHFSSPN 60 TEIPPSPPPV VLSPCAACKI LRRRCGEKCV LAPYFPPTHP LKFTIAHRVF GASNIIKFLQ 120 EIPESQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQAQLAKA QAELVNMQYQ 180 QANLVALICM EMTKSQECYN GVINEQLQVI PSVDTGSLLE DNNLALAWEP LWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-40 | 69 | 176 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-40 | 69 | 176 | 6 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018836460.1 | 1e-170 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-75 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2I4FXT8 | 1e-168 | A0A2I4FXT8_JUGRE; LOB domain-containing protein 1-like | ||||
STRING | XP_006485928.1 | 1e-88 | (Citrus sinensis) | ||||
STRING | XP_006436214.1 | 5e-89 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-64 | LOB domain-containing protein 1 |