PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015410-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 306aa MW: 33166.7 Da PI: 7.5782

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015410-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.8	1.3e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q WALNUT_00015410-RA 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEQLRPAIFRSLLYEACGRMVNPIYGSVGLLWSGSWQ 94 6**************************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q+++e++l ++ WALNUT_00015410-RA 95 LCQTAVEAVLKGS 107 *****998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	6.6E-94	1	300	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.106	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEQ 60 LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GSWQLCQTAV EAVLKGSPIT TITSEAAASD 120 HGPPLKAYDI RHVSKDENSA ASSDPHRVKS RCRFKRSVIK PRASKVVLGA VDDSSRDAKL 180 KWDVGCCGQE LNGLNGSTSH ESSLSHQSSL APNVEGESKD TESMTSVETV EDSVLFLTEP 240 ESIPEPNEQN QESEIPLELT LGFVPVSQTN LVVPVKKRKV ESCASGSTGF GACKMELGLN 300 YRGLIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018815450.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-101	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2I4E7T1	0.0	A0A2I4E7T1_JUGRE; LOB domain-containing protein 41-like
STRING	EMJ16944	1e-149	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-96	LOB domain-containing protein 41