PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015385-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 718aa MW: 77898.9 Da PI: 6.7775 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 5e-07 | 292 | 312 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg WALNUT_00015385-RA 292 PCPEFRK-GTCRQGDACEYAHG 312 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.5E-15 | 62 | 172 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.6E-7 | 83 | 155 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.45E-14 | 84 | 167 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.026 | 88 | 118 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.99 | 88 | 163 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.45E-9 | 90 | 163 | No hit | No description |
SMART | SM00248 | 3.0E-4 | 123 | 155 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.048 | 123 | 158 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 5.4E-5 | 287 | 313 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 292 | 312 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.784 | 292 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 31 | 322 | 345 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.944 | 322 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MADCGRLRRG GTSMCSGSER KPSQTGFVME GEFGRKEGLQ PNFSVLLELS ASDDLIGFKR 60 AVEEEGYDVD EASLWYGRRI GSKMMGFEER TPLMIAAMFG SKGVLNYILG TGLVDINRAS 120 RSDGATVLHC AAAGGSDASA EVVKLLLDAS ADVNALNANG KRPSDLIALG LNSASNLMKK 180 KLEVMPKGFS GIDDPFVLYD QMGTEMEGQE QQEASTPRVF KDGTEKKEYP VDLSLPDIKN 240 GIYSTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGT 300 CRQGDACEYA HGIFECWLHP AQYRTRLCKD ETGCTRRVCF FAHKPEELRP LYASTGSAVP 360 SPRSFSANNP GLDMGSISPR ALGSPSVLIP SSSTPPMTPS GATSPMGGGT MWQNQSSIVP 420 PSLQLPGSRL KTALSARDLD LDIEFLGLEN HRRRQQQLLD EISGLSSPSG WKSSLAVTLG 480 DRIGELNRLG LVKPTNLDDI FGSLDPALLP QFQGLALDVS APQLQSPTGM KVRQNMNQQL 540 RSSYGTGLSS SPVRASSPFG VDPNGAAAAT AVKSRSAAFA MRSQSFIERS AAKSHSGLSS 600 PGGSASVMHS TLSDWGSPDG KLDWRLQGEE LNKLRKSASF GFRSNGSSYA TSAAMMPATL 660 NEPDVSWVQS LVKDAPPVKH GQLGYEKEQQ QCHLDSGGSE MLPAWVEQLY MEQEQMVA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835448.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A2I4FUX4 | 0.0 | A0A2I4FUX4_JUGRE; zinc finger CCCH domain-containing protein 66-like | ||||
STRING | EOY33703 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |