PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015335-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 257aa MW: 28856.5 Da PI: 7.5235 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107 | 1.5e-33 | 19 | 116 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCa+C+++r+kC + C +apyfpa+ +++f+ vh++FG+ nv+k+l +l+ ++re a++s+ +eA ++ +dPv+G +g +++l+q+l+ l+ WALNUT_00015335-RA 19 ACASCRHQRKKCDNTCLMAPYFPAHMAENFQTVHRVFGVGNVSKILMNLDVQHRELAAESIKWEAAIWRQDPVHGPLGKYRQLEQELQLLR 109 7*****************************************************************************************9 PP DUF260 92 aelallk 98 ++l +++ WALNUT_00015335-RA 110 NQLITQE 116 9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.489 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-32 | 19 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSMPRGRAEE PCSSNYRHAC ASCRHQRKKC DNTCLMAPYF PAHMAENFQT VHRVFGVGNV 60 SKILMNLDVQ HRELAAESIK WEAAIWRQDP VHGPLGKYRQ LEQELQLLRN QLITQEKILN 120 QWSIYSSNQS EVGMMLPSSE GGLNSGLTCS LQGEQEIESQ GVVSCTGIPY NTEGVGNFGT 180 AQQPQPAVGS CSMGQGQPRR NQAGNHMAMT YRSDRGMLQF GLTPHHHVNP LLSKDLDCLR 240 YQWNLQSTDW NSNLHSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-18 | 20 | 112 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-18 | 20 | 112 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018838459.1 | 1e-126 | PREDICTED: LOB domain-containing protein 2-like | ||||
TrEMBL | A0A2I4G3H0 | 1e-125 | A0A2I4G3H0_JUGRE; LOB domain-containing protein 2-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14786 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 7e-26 | LOB domain-containing protein 2 |