PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015310-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 331aa MW: 36213.9 Da PI: 6.8495

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015310-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.3	3.9e-36	20	168	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...ea 75 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + +a WALNUT_00015310-RA 20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwhppgtsnstavQ------QpdpNA 104 79**************************************************************777776543333221......022222 PP TCP 76 esssssasnsssg............................kaaksaakskksqksaasalnla 111 +s + + +++s++ +a k++ ks ++++sa+s ln++ WALNUT_00015310-RA 105 GSAELTIAEQSESsgydfllhrqlegnpddnsafippsldsEAIKDTLKSLFPTSSATSSLNFQ 168 2222222222222445556555555666666666666666544455556666666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.1E-32	20	95	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.979	22	80	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MKSTGGEIVQ VQGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIQF YDVQDRLGYD 60 RPSKAVDWLI KKAKSAIDKL AELPPWHPPG TSNSTAVQQP DPNAGSAELT IAEQSESSGY 120 DFLLHRQLEG NPDDNSAFIP PSLDSEAIKD TLKSLFPTSS ATSSLNFQSY PSDIISRASN 180 PSEEYLGLSL HSFQDHSTPN DHNLFSGSAS MGFDINYQRM VAWNSDTSGE HRGDFVFNSQ 240 TLPQQALLGQ GSAFSQRGPL QSSFAPPFRA WDDLPIATSD HHKTLPIHQS LVCGSRFATD 300 TLSGFCIPAT IRGEEERSAN KPSSASSNSR H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-21	27	80	1	54	Putative transcription factor PCF6
5zkt_B	2e-21	27	80	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018824476.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_018824477.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_018824478.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_018824479.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_018824480.1	0.0	PREDICTED: transcription factor TCP4-like
Swissprot	Q9MAH8	4e-77	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A2I4EYK7	0.0	A0A2I4EYK7_JUGRE; transcription factor TCP4-like
STRING	cassava4.1_031505m	1e-152	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	9e-74	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]