PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015111-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 341aa    MW: 37581 Da    PI: 7.262
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015111-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.6e-07439439
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtv 39
                        + C+ +++  ++lfC+  + +lC +C l+ H  H++
  WALNUT_00015111-RA  4 KLCDSCQSATATLFCRAHSAFLCLSCDLKVHAVHKL 39
                        58*****************************88986 PP
2zf-B_box24.46e-084791442
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  WALNUT_00015111-RA 47 FLCEACEHAPAHVTCKADAASLCVTCDRDIHSAnplarrHDRVPV 91
                        57*****************************66899999999986 PP
3CCT70.63.9e-24280323144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  WALNUT_00015111-RA 280 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRS 323
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.5E-11148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.665148IPR000315B-box-type zinc finger
PfamPF006432.5E-5439IPR000315B-box-type zinc finger
CDDcd000211.66E-7548No hitNo description
PROSITE profilePS5011910.8794491IPR000315B-box-type zinc finger
CDDcd000217.41E-74791No hitNo description
PfamPF006434.9E-64891IPR000315B-box-type zinc finger
SMARTSM003361.7E-94991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787280322IPR010402CCT domain
PfamPF062035.0E-18280322IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASKLCDSCQ SATATLFCRA HSAFLCLSCD LKVHAVHKLA TRHARVFLCE ACEHAPAHVT  60
CKADAASLCV TCDRDIHSAN PLARRHDRVP VTTFYDSVNR SSGVKATTAV SFLDDHYFSD  120
VGGDGDVCRE GAEAASWFLP NHNNNNNKVM ASQDPNSDRF IFTDMDPYLD LDYGPGEPEL  180
EAQEQNSSGN DGVVPVQSKS VHQPPLLNDH CFDMKFSGSK LYAYGCNSRS LSHSVSSSSL  240
DVGVVPDGNT VTDISDSYCK PTCIGTDSAN LTVQISAADR EARVLRYREK RKNRKFEKTI  300
RYASRKAYAE TRPRIKGRFA KRSDIGVEDD RRCGYVVVPT F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839540.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-130COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2I4G6M90.0A0A2I4G6M9_JUGRE; zinc finger protein CONSTANS-LIKE 4-like
STRINGcassava4.1_011192m1e-161(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-130CONSTANS-like 4