PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015098-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 271aa    MW: 30480.3 Da    PI: 6.3037
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015098-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.85.2e-56861901102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+
  WALNUT_00015098-RA  86 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDV 176
                         89******988889***************************************************************************** PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdi+prdelk
  WALNUT_00015098-RA 177 FDFLVDIIPRDELK 190
                         ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-3467180IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-37100172IPR009072Histone-fold
PfamPF008082.4E-21108171IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDQSEQTQKQ QQQQHQQAVV GVAAGANQMA YATPYQTAPM VASGTPTGAV HSPTQPPTTF  60
ANPSHQLAYQ QAQHFHNQQQ QQQQQQLQMF WANQMQEIEQ TTDFKNHSLP LARIKKIMKA  120
DEDVRMISAE APVIFAKACE MFILELTLRS WIHTEENKRR TLQKNDIAAA ISRTDVFDFL  180
VDIIPRDELK EEGLGVTKAT IPVVGSPADI PYYYVPSQHP VGPTGMIMGK PVDQAAMYAT  240
QQPRAPMAFM PWPQSQTQQQ QQPPQQQQTD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-5994186395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847918.10.0PREDICTED: nuclear transcription factor Y subunit C-2
TrEMBLA0A2I4GVK30.0A0A2I4GVK3_JUGRE; nuclear transcription factor Y subunit C-2
STRINGcassava4.1_014024m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-76nuclear factor Y, subunit C2