PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014955-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 300aa MW: 32823.6 Da PI: 6.3601 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.8 | 2.5e-22 | 24 | 71 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + enks ++vtfskRr+g++KKA+EL+vLC++++a+i +s+ k y + WALNUT_00014955-RA 24 QLENKSTKHVTFSKRRAGLFKKASELCVLCGVDIAIIAYSPGEKAYSF 71 679**************************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-30 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.642 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.24E-30 | 16 | 88 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-26 | 16 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-18 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-22 | 26 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-18 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-18 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MAMATTCQKI KKITQGRRKI EIKQLENKST KHVTFSKRRA GLFKKASELC VLCGVDIAII 60 AYSPGEKAYS FGHPNVDTVL NSYLTGNALP AYSAVNPWPV EEFNKEYAES LKELDDEKKL 120 LADIDQDLTS KKKMGNNNIG FLWDEPIDEM GIEELEQYLA AMKEMRAKAT DQYLRMRNSI 180 NRLQTSDYKY NGGLGYYNDQ GLGDYNRHEY GNNCLSGISG TGEDVGSTSS GGFGLGINNY 240 QFGNPSSGGQ IGGDFGASSC TGFGLGNYQF CSNLQISTTA PGSSTGGYGV GDYEHHACRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850179.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_018850180.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2I4H224 | 0.0 | A0A2I4H224_JUGRE; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_002532452.1 | 9e-49 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-33 | AGAMOUS-like 62 |