PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014943-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YB | ||||||||
Protein Properties | Length: 237aa MW: 26080.6 Da PI: 5.6342 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 173.9 | 1.6e-54 | 25 | 120 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdrflPianvsrimkk lPanakisk+aketvqecvse+isf+t+easdkcqrekrktingddllwa++ lGfe+yv pl+ yl kyre WALNUT_00014943-RA 25 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEYISFITGEASDKCQREKRKTINGDDLLWAMTILGFENYVGPLRNYLGKYRE 115 79***************************************************************************************** PP NF-YB 93 legek 97 +eg+k WALNUT_00014943-RA 116 TEGDK 120 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.8E-52 | 23 | 143 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.66E-39 | 27 | 134 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-26 | 30 | 94 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-17 | 58 | 76 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 61 | 77 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-17 | 77 | 95 | No hit | No description |
PRINTS | PR00615 | 1.6E-17 | 96 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MTGKRSQTSP DVGSPSSGDI MISLKEQDRF LPIANVSRIM KKSLPANAKI SKEAKETVQE 60 CVSEYISFIT GEASDKCQRE KRKTINGDDL LWAMTILGFE NYVGPLRNYL GKYRETEGDK 120 TSMARQGDQS PTDSYTDHGT NYNDQIHRAM SSSTTTANSV VATADFQRFS GGFYSFGTQV 180 NPDSYGESSG RSGTGYEDQN MVIGAFKGNE FCENGNGNGN RAVAQAHDHL HHDVVEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 5e-46 | 24 | 115 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 5e-46 | 24 | 115 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850126.1 | 1e-180 | PREDICTED: nuclear transcription factor Y subunit B-8-like | ||||
TrEMBL | A0A2I4H1T6 | 1e-179 | A0A2I4H1T6_JUGRE; nuclear transcription factor Y subunit B-8-like | ||||
STRING | XP_006493850.1 | 2e-89 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-62 | nuclear factor Y, subunit B3 |