PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014878-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 333aa    MW: 37739 Da    PI: 7.6639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014878-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12157202555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+++Lq
  WALNUT_00014878-RA 157 HVIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLQQLQ 202
                         899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.031152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-17156216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-12157206No hitNo description
PfamPF000106.2E-10157202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-15158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEDPRFISQW HMNYVDELSI PPLAATFEEE SLQQYPFTHP NFNLRNHDMA ASRTGIDAPM  60
KMLKPNSWNS SKLEHVSYPQ HSPSQNVLSF ANANYANQMG ILNPKEEAAV CFKRMNTLPS  120
DILISQDSLG NQDYGLKACQ GGRRIRRSTR HSQTPDHVIA ERKRREKLSQ RFIALSALVP  180
GLKKMDKASV LGDAIKYLQQ LQERVKTLEE QTKKRNIESA VFVKKSQLFV DGDNSSSGEN  240
FSSDPLDEHL PEIEARFCDK NVLIRVHCEK RKGVLEKLIA EIEMLHLTVI NSSVITFGSS  300
ALDITIIAQM DEGFSMTVKD LVRSLRSAFE SIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14156216869Transcription factor MYC2
5gnj_B4e-14156216869Transcription factor MYC2
5gnj_E4e-14156216869Transcription factor MYC2
5gnj_F4e-14156216869Transcription factor MYC2
5gnj_G4e-14156216869Transcription factor MYC2
5gnj_I4e-14156216869Transcription factor MYC2
5gnj_M4e-14156216869Transcription factor MYC2
5gnj_N4e-14156216869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRE
2161166RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826860.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A2I4F5D00.0A0A2I4F5D0_JUGRE; transcription factor bHLH25-like
STRINGEMJ015501e-147(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-68bHLH family protein