PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014850-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 351aa MW: 36553.5 Da PI: 9.433 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 6.8e-39 | 74 | 133 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ WALNUT_00014850-RA 74 ETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 133 7789*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 7.06E-5 | 36 | 45 | No hit | No description |
ProDom | PD007478 | 2.0E-31 | 57 | 122 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-32 | 76 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.544 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MVFSSIPAYL DPANWQQQPN HPPGTSAAAA SSQLLPPPPP PPPPPQPHGG GSSGSIRPGS 60 MADRARMANI PMPETALKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV 120 PVGGGCRRNK RSKGSSSKSP ASSADRQSGS AGSTSSIPSN SGTAGDVIGL GPTMPPLRFM 180 TPNLHQLTHD FAASEIGLNY GLNYGAISAP MGVAGDLNFH IGSALGGGAG TDGGGSLLSS 240 GGLEQWRLQQ TQQFPFFGGL DPNSVPGLFG SGVDASSYVG GASQGRVKAS SSGVTQQAAS 300 VKMEENNQEL NLSRQFLGIP GNEQYWSGNT STTAWTDLSG FSSSSTTRNP L |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00295 | DAP | Transfer from AT2G37590 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018831327.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A2I4FI63 | 0.0 | A0A2I4FI63_JUGRE; dof zinc finger protein DOF5.1-like | ||||
STRING | EOY07547 | 1e-129 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 4e-44 | DNA binding with one finger 2.4 |