PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014765-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 444aa    MW: 50550 Da    PI: 6.8764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014765-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-19188234148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WTteEd ll+++v+q+G + W+ Ia++++ g+ +kqc++rw+++l
  WALNUT_00014765-RA 188 KGQWTTEEDRLLIELVQQYGVRKWSHIAQMLP-GKIGKQCRERWHNHL 234
                         799*****************************.*************97 PP
2Myb_DNA-binding56.28.1e-18240282145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
  WALNUT_00014765-RA 240 KDAWSEEEDKVLIHAHAEIGNR-WAEIAKRLP-GRTENSIKNHWN 282
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.736183238IPR017930Myb domain
SuperFamilySSF466891.73E-31185281IPR009057Homeodomain-like
SMARTSM007172.1E-18187236IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-28189242IPR009057Homeodomain-like
CDDcd001672.00E-16191234No hitNo description
PfamPF139211.6E-19191249No hitNo description
PROSITE profilePS5129421.824239289IPR017930Myb domain
SMARTSM007176.1E-17239287IPR001005SANT/Myb domain
CDDcd001672.68E-13242285No hitNo description
Gene3DG3DSA:1.10.10.602.6E-22243287IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MELETKLREN LASQALLLSD NHLKPYMKDE FSFGTPSKGF LQDFQSLNRF HTKGSSSNPS  60
FGVQTECYGS LINNFTYGCS TDFDDIHNYC KPFADSGGNG HVMDNFHSGG YLNIPQRNPP  120
YDTMGTDQGY MIFTTWQDIK PINFVVPDEV SCITAENGYN KKVGMNKNIA LPETMRAYRG  180
PRKCNVAKGQ WTTEEDRLLI ELVQQYGVRK WSHIAQMLPG KIGKQCRERW HNHLRPDIKK  240
DAWSEEEDKV LIHAHAEIGN RWAEIAKRLP GRTENSIKNH WNATKRRQYS KRKCRSKYPR  300
ASLLQEYIKS LNLDSNTAKN WRKPSASNAT TTNDTTLKAP VLQPELSSDN LDYDFCFDEN  360
MCQEGCSIDS LLDANTPCAP VVDVKDFDGK MPCAPVFDDN DFDMGIPALD MSPVIECESK  420
KGLDLVETIS QVNEVKRSYF MKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-461882884104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-461882884104C-Myb DNA-Binding Domain
1msf_C6e-461882884104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821250.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L29e-91MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2I4EPB90.0A0A2I4EPB9_JUGRE; transcription factor MYB98-like
STRINGXP_008239795.11e-157(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-92myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]