PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014758-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 320aa MW: 35379.5 Da PI: 7.0673 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128 | 2.8e-40 | 51 | 111 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s WALNUT_00014758-RA 51 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 111 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 49 | 109 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-33 | 52 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.189 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGLASLQVCM DSSDWLQGTI HDDSGMNSSS PSEDMLTCSR PLMERRLRPQ HDQALKCPRC 60 DSTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGTLRNIPV GGGCRKNKKV SAKKPNDQPM 120 NQNQPGSSSS HNPTDLQLSF PEVQLSHLTH ILGTHGTLGN PNFMDTKYHG MLENPRPIDF 180 MESTKMENVA GNSRNYDFMG NGDLGMVGGL GDLSSAHGLA PNFHGLCSPY GMSIDGNSTT 240 GTFMETCQRL MLPYDANDHH HHHQDHTAID VKPNTKLLSL DWQDQGCSDA GKDSFGYLNG 300 LGLWTGMMNG YGTSSSNPLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LK022690 | 8e-90 | LK022690.1 Fagus sylvatica partial dag gene for dof zinc finger protein, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821238.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.6 | ||||
Swissprot | Q9FM03 | 2e-62 | DOF56_ARATH; Dof zinc finger protein DOF5.6 | ||||
TrEMBL | A0A2I4EPC5 | 0.0 | A0A2I4EPC5_JUGRE; dof zinc finger protein DOF5.6 | ||||
STRING | EOY20732 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5092 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 1e-60 | Dof family protein |
Publications ? help Back to Top | |||
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