PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00014750-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 191aa MW: 22173 Da PI: 8.3296 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 15 | 55 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT eEd +l ++v+ +G+g W++Ia++ g++R++k+c++rw WALNUT_00014750-RA 15 WTVEEDRILMEYVRVHGKGKWNRIAKMSGLKRCGKSCRLRW 55 ***************************************** PP | |||||||
2 | Myb_DNA-binding | 31.1 | 5.6e-10 | 54 | 78 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++q+k++w+++l WALNUT_00014750-RA 54 RWSLIAGRVP-GRTDNQVKNHWNTHL 78 4*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-17 | 7 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.79 | 7 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 11 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-18 | 12 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.93E-12 | 15 | 78 | No hit | No description |
Pfam | PF00249 | 3.4E-14 | 15 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 55 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MEGRHGNHEY KKALWTVEED RILMEYVRVH GKGKWNRIAK MSGLKRCGKS CRLRWSLIAG 60 RVPGRTDNQV KNHWNTHLSK KLGIKKEKNK VGVNARLSSR DLGVDNRNIF SKFNCNETFN 120 DNVREIATET VTKCDSHDDD VFKFIIDRQE DTIDDNYASS FQLFSDDLSS HIAYLMEPLD 180 AYSLDFVWDG L |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821248.1 | 1e-134 | PREDICTED: transcription factor WER-like isoform X2 | ||||
Swissprot | Q9SEI0 | 1e-41 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2I4EPD5 | 1e-132 | A0A2I4EPD5_JUGRE; transcription factor WER-like isoform X2 | ||||
STRING | EOY20709 | 3e-55 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-42 | myb domain protein 66 |