PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014729-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | SBP | ||||||||
Protein Properties | Length: 536aa MW: 59474.3 Da PI: 8.4768 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134 | 4.8e-42 | 178 | 253 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvC+vhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q WALNUT_00014729-RA 178 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTTKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 253 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.3E-33 | 171 | 239 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.351 | 175 | 252 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-39 | 176 | 257 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-31 | 178 | 251 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MMEPWSYNLE GKGLMFSDEI DLQVDVRATS KKPSEWGDKS TFNFERNGLV SNGEAVARME 60 LEFHDFVRKP FHGNQGMEIL SGEVCCSTSK RAVSPQCMFA SNSCFEEVAS EAKLSSSVLE 120 ANSLNSSLID LKLGRLADWK DVENSKILKY RPVLPSAPPS LLTKRARKTS SYSQTAFCQV 180 YGCNKDLSSS KDYHKRHKVC DVHSKTTKVI VNGIEQRFCQ QCSRFHLLAE FDDGKRSCRK 240 RLAGHNERRR KPQLDTLSGK HKLLQSYQGT GYLGTSLPKR TPFVFPDIFQ AGVVYPGKSV 300 QANGFRHIKL EGESFNSPQS AMPITSRQLL SNSILHLHSI GKQHCLGLPS SGTEDCNVTV 360 STVQELSGPS ISSRALSLLS AQSQDLSSHL TGIPMASPQI MQGDSAHHGN VQVSEKPLRV 420 SSMEQYGPNG LYSYGMNSIE VDKLGSIMFS DPSHAAGFQV HNDGIFQESK MLNAKYCLPD 480 HGSTVDWLQL SSHLQRVEQQ KNSPQVKQEN DGSCYFPTFR AVCNPQGMPN IFTLKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 169 | 251 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018818464.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X2 | ||||
TrEMBL | A0A2I4EGD6 | 0.0 | A0A2I4EGD6_JUGRE; squamosa promoter-binding-like protein 6 isoform X2 | ||||
STRING | EOY01636 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-50 | SBP family protein |