PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014644-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SRS
Protein Properties Length: 309aa    MW: 32818.5 Da    PI: 9.2854
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014644-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702189.89.6e-591082693154
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkls 92 
                         sg   C+dCGn+akkdC+++RCRtCCksrg dCathv+stWvpaa+rr+r+         +a+s +++  kr+r + +  + +a+s++++s
  WALNUT_00014644-RA 108 SGMRVCRDCGNKAKKDCTYRRCRTCCKSRGNDCATHVRSTWVPAARRRDRRMSVVGG-DGDASSGSSSGVKRPRIEvSPPNVNATSHASTS 197
                         67789********************************************97666655.566667788888999977456667788889999 PP

              DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         +a++++++ +ss          lP++v+++avfrc rv++v+ ge+e+ Yq++vsi+GhvfkG+Lyd+G+++
  WALNUT_00014644-RA 198 NATTPRSTGISSshqdasfkhsLPRQVRAPAVFRCHRVTAVSSGEAEIVYQATVSISGHVFKGFLYDHGVDD 269
                         9999999998888899999999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-54111268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.1E-25112154IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.0E-24220267IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGMLGIRDLV LIAPTSSMHQ QNQPISAEHH PNLPLPSSAA LGVGLGIFPL LTATPCITPS  60
NNGVQDCGNS NNRNCWTLKK GQELSSSNKG GLDVENDASE QMFESSGSGM RVCRDCGNKA  120
KKDCTYRRCR TCCKSRGNDC ATHVRSTWVP AARRRDRRMS VVGGDGDASS GSSSGVKRPR  180
IEVSPPNVNA TSHASTSNAT TPRSTGISSS HQDASFKHSL PRQVRAPAVF RCHRVTAVSS  240
GEAEIVYQAT VSISGHVFKG FLYDHGVDDK NSFPSVSQMH LESSSRGGRN RESSSPIVAP  300
SNAHPGSGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849430.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_018849431.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_018849432.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A2I4GZU20.0A0A2I4GZU2_JUGRE; protein LATERAL ROOT PRIMORDIUM 1
STRINGGLYMA04G17885.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-58Lateral root primordium (LRP) protein-related