PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014608-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 556aa    MW: 60509.4 Da    PI: 4.778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014608-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-173986148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +lvd vk++G g+W+++ ++ g+ R++k+c++rw ++l
  WALNUT_00014608-RA 39 KGPWTSTEDAILVDFVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86
                        79******************************************9986 PP
2Myb_DNA-binding51.71.9e-1692135146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  WALNUT_00014608-RA  92 KGAFTAEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6413486IPR017930Myb domain
SMARTSM007171.2E-143888IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-3038133IPR009057Homeodomain-like
PfamPF002497.8E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-234093IPR009057Homeodomain-like
CDDcd001672.66E-114186No hitNo description
PROSITE profilePS5129426.4287141IPR017930Myb domain
SMARTSM007173.8E-1791139IPR001005SANT/Myb domain
PfamPF002491.9E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2694140IPR009057Homeodomain-like
CDDcd001671.39E-1294135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MPCKTTESEE GSLPKDQCES PLINENNEGC AGGGVVLKKG PWTSTEDAIL VDFVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTAEEE RLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCFQALQES QHGQNTVGVN GGDRGHHDIL  180
LTNSYEIPDV IFDSLKANQG VLPYVPELPD IPTSSMLLKG LGSPQYCTLQ PIMPIQKRLR  240
ESNELFPGPS ASVGNGFSSF EQFQDDTCDK VALSFGFSLP LDPDPAIKNS ESFGVIQGCH  300
SLSNGNSSAS KPTSRAVKLE LPSLQYAETD FSNWVASSPR PLLESVDAFI KSPPPAGTFE  360
IDCSSPRNSG LLDALLQESK NLSSSKKHSS DKSSNSSSAT PGDIADSSTL NICETEWADY  420
GDPISPFGHS TTSLFSEISP ISASGSSMDG QPSAETFTGI IVKSEPVDIA WTSDREEEST  480
ARLSFTQPDA LLGVDWLEQS SGCIKDQSTF ATFLDDDFDI DYKHMAAGTS TSNQGWGLNS  540
FAWNNMPAVC QMSDLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32371405107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849363.10.0PREDICTED: transcription factor GAMYB
RefseqXP_018849365.10.0PREDICTED: transcription factor GAMYB
RefseqXP_018849366.10.0PREDICTED: transcription factor GAMYB
RefseqXP_018849367.10.0PREDICTED: transcription factor GAMYB
TrEMBLA0A2I4GZM80.0A0A2I4GZM8_JUGRE; transcription factor GAMYB
STRINGXP_008231582.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-132myb domain protein 33