PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014601-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 371aa    MW: 41779.9 Da    PI: 10.0832
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014601-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32184237255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  WALNUT_00014601-RA 184 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 237
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15181237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28182237IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23184237IPR006447Myb domain, plants
PfamPF002492.4E-7185236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PIRSTWRSTT TEEEVDLGFW KRALDSRTSM SSMAKPDTCF  60
DLSLSNPRAS ESLTNHNHNH QLGNGNPFQT LQRINHYPQV LQHQPMFQQP PQGLSQELGF  120
LRPIRGLPVY QNLPNFQYAQ QPLDASQPSS IANTCTSSSP FQSQGLMRSR FLSRFPAKRS  180
MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT  240
TDRAAASSGQ SDVFENGSSG DTSEDLMFDI HNPKRLQPSV QQGRPLTTQD HKDYRGLWSN  300
SSSSREARLH GKPKYSGGNI ASLHDQKDMD PKCLSYERMS SDVNSSANHT GTSPKKPNLE  360
FTLGRPLRNL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16185239357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16185239357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16185239357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16185239357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16185239458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852240.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6166e-97KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A2I4H7W90.0A0A2I4H7W9_JUGRE; probable transcription factor KAN2 isoform X1
STRINGVIT_02s0012g01940.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-96G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]