PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014488-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25653.4 Da PI: 5.509 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.8e-19 | 41 | 95 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le+ Fe++ + +++ +LA +lgL+ rqV +WFqNrRa++k WALNUT_00014488-RA 41 KNKGRFSDEQIKSLESIFESETRLEPRKKVQLAGELGLQPRQVAIWFQNRRARWK 95 56678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.8 | 7e-39 | 42 | 133 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k r+s+eq+k+LE+ Fe+e++Lep++Kv+la eLglqprqva+WFqnrRAR+k+kq+E++y++L+++y++l+++ e+L+ke+++L +l+ WALNUT_00014488-RA 42 NKGRFSDEQIKSLESIFESETRLEPRKKVQLAGELGLQPRQVAIWFQNRRARWKSKQIEQEYRTLRDNYENLASQFESLKKEKQSLLIQLQ 132 689***********************************************************************************99998 PP HD-ZIP_I/II 93 e 93 + WALNUT_00014488-RA 133 K 133 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-21 | 23 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-19 | 26 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.912 | 37 | 97 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 39 | 101 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.9E-17 | 41 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.33E-16 | 46 | 98 | No hit | No description |
PRINTS | PR00031 | 9.1E-6 | 68 | 77 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 72 | 95 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.1E-6 | 77 | 93 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-14 | 97 | 138 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEGSEYLYAP AVPEGRYENI TSVQQPVPGL STPRKRKNKN KNKGRFSDEQ IKSLESIFES 60 ETRLEPRKKV QLAGELGLQP RQVAIWFQNR RARWKSKQIE QEYRTLRDNY ENLASQFESL 120 KKEKQSLLIQ LQKLGDLLGK TDDGNGDSKG MEGNNTVGRS DNVSNDIETK ERPSCADEDY 180 KNDLGSFGEE GHGFLNVSEQ HGPLASLEKW YSAYDSGGLL DNSYIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 97 | RRARWKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822320.1 | 1e-166 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 9e-50 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2I4ESF1 | 1e-164 | A0A2I4ESF1_JUGRE; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | cassava4.1_015051m | 2e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 7e-44 | homeobox 7 |
Publications ? help Back to Top | |||
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