PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014344-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 319aa    MW: 36126.6 Da    PI: 4.6243
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014344-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092673002255
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp+++++  LA+++gL+++q+ +WF N+R ++
  WALNUT_00014344-RA 267 WPYPTEADKIALAESTGLDQKQINNWFINQRKRH 300
                         58*****************************885 PP
2ELK30.67.5e-11220241122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         +LK++LlrK+++++g+Lk EFs
  WALNUT_00014344-RA 220 DLKDRLLRKFGSHIGTLKLEFS 241
                         69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.8E-2382126IPR005540KNOX1
PfamPF037904.9E-2284125IPR005540KNOX1
SMARTSM012564.7E-28132183IPR005541KNOX2
PfamPF037911.1E-25136182IPR005541KNOX2
SMARTSM011882.9E-5220241IPR005539ELK domain
PROSITE profilePS512139.655220240IPR005539ELK domain
PfamPF037898.4E-8220241IPR005539ELK domain
PROSITE profilePS5007112.795240303IPR001356Homeobox domain
SuperFamilySSF466893.59E-19241313IPR009057Homeodomain-like
SMARTSM003899.0E-14242307IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-27245304IPR009057Homeodomain-like
CDDcd000863.19E-13249304No hitNo description
PfamPF059201.3E-17260299IPR008422Homeobox KN domain
PROSITE patternPS000270278301IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDDIYGLNSA VDYSDNYKTL MSPENLILPT ADYYQSFFSS ASAVRDNRFP LFGSDELLSA  60
ASAVSEAASI TPEIQLQEDM SSMIKAKIAS HPCYPRLLQA YIDCQKVGAP PEIASFLDEI  120
RRENDFCNRD AVSTCLGADP ELDEFMETYC DMLVKYKSDL SRPFDEATTF LNKIEMQLSN  180
LCTGASIRSL SDEGAVSSDE DLSGGEMEVQ DAKLRGEDRD LKDRLLRKFG SHIGTLKLEF  240
SKKKKKGKLP REARQTLLEW WNVHCKWPYP TEADKIALAE STGLDQKQIN NWFINQRKRH  300
WKPSENMQFA VSGQLFSDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805223.10.0PREDICTED: homeobox protein knotted-1-like 6
RefseqXP_018805224.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-147KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2I4DDJ70.0A0A2I4DDJ7_JUGRE; homeobox protein knotted-1-like 6
STRINGVIT_01s0127g00210.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-133KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]