PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014274-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 204aa    MW: 22856.9 Da    PI: 8.6102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014274-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18555155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  + g
  WALNUT_00014274-RA  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMSG 55
                        59*****999.**********8.....334*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.31E-22565No hitNo description
SMARTSM003807.5E-37669IPR001471AP2/ERF domain
PfamPF008473.9E-11653IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32664IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-20664IPR016177DNA-binding domain
PROSITE profilePS5103221.891663IPR001471AP2/ERF domain
PRINTSPR003673.2E-10718IPR001471AP2/ERF domain
PRINTSPR003673.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMSGQNAKT  60
NFPTANGRHE DTKACGDSPL SPKALSELLS TKLRKCCKDQ YPSLTCLRLD ADNSHIGVWQ  120
KRAGARSASN WVMRIELGKK QTQTLEDSLS SGSPRVEIHD AGNGMDEEDS IAMQMIEELL  180
NWNCPAPSNF QEEKGNLPCL GTWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822208.11e-153PREDICTED: ethylene-responsive transcription factor SHINE 3-like
SwissprotQ3E9583e-81SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A2I4ES461e-151A0A2I4ES46_JUGRE; ethylene-responsive transcription factor SHINE 3-like
STRINGXP_008466408.17e-94(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-73ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]