PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014009-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C3H

Protein Properties

Length: 733aa MW: 79689.3 Da PI: 6.5469

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014009-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg WALNUT_00014009-RA 309 PCPEFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	4.7E-16	38	184	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.02E-16	83	190	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-9	84	153	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	6.7E-4	84	114	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	18.51	84	191	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.60E-14	84	162	No hit	No description
PROSITE profile	PS50088	11.007	119	154	IPR002110	Ankyrin repeat
SMART	SM00248	0.11	119	151	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	304	330	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	309	329	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	309	331	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-4	337	367	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	35	339	362	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MCSGPERSES SSTPSVSTVE ITSNTKDMNN PTVQAESSFS SLLDLAANND VAGFKQSAEK 60 DASLIDEVGL WYVRQKGSKQ IVLEHRTPLM VAATYGSVDV LKFILSHSGV DVNFSCGQDK 120 TTALHCATSG GSINTADVLK LLLLMGADPN RTDANGLRPI DVLIVPPKMQ SMRVAVEELL 180 SNNASDSSFS EHHLRVSISS SCSDSPTLSS SPENGLPSYP SELVSSLMAS KFNDIPVSYA 240 LEKKEYPVDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH 360 TAEELRPLYL STGSAVPSPR SSASAHGVMD MAAAMSLLPG SPSSISALSP SPFAQPMSPS 420 ANNGMSQSSI AWPQPNVPTL SLPGSNLQSS RLRSSFSARD IPPEHLSVMQ DFDAQQHLLN 480 DLTCFSQSWS NNVPANRPGR SKTLTPSNLE ELFCAEISSS PRYSDAAASV VFSPAHKSAV 540 LNQFQQQQSM LSPINTNVFS PKNVDHPLLQ ASFGIQSPGR MSPRSVEPIS PIGSRLAAFA 600 QREKQHQQLH SLSSRDLGSN NQASIGCSPV NSWAKWGSPN GKLDLLVNGD DMGRLRRSSS 660 FELANNGEEP DLSWVQSLVK ESPTELMKEK LAVSASRAAS SGEGLNSNSQ SESIDHSVLG 720 AWLEQMQLDQ LVV

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MCSGPERSES SSTPSVSTVE ITSNTKDMNN PTVQAESSFS SLLDLAANND VAGFKQSAEK  60
DASLIDEVGL WYVRQKGSKQ IVLEHRTPLM VAATYGSVDV LKFILSHSGV DVNFSCGQDK  120
TTALHCATSG GSINTADVLK LLLLMGADPN RTDANGLRPI DVLIVPPKMQ SMRVAVEELL  180
SNNASDSSFS EHHLRVSISS SCSDSPTLSS SPENGLPSYP SELVSSLMAS KFNDIPVSYA  240
LEKKEYPVDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH  360
TAEELRPLYL STGSAVPSPR SSASAHGVMD MAAAMSLLPG SPSSISALSP SPFAQPMSPS  420
ANNGMSQSSI AWPQPNVPTL SLPGSNLQSS RLRSSFSARD IPPEHLSVMQ DFDAQQHLLN  480
DLTCFSQSWS NNVPANRPGR SKTLTPSNLE ELFCAEISSS PRYSDAAASV VFSPAHKSAV  540
LNQFQQQQSM LSPINTNVFS PKNVDHPLLQ ASFGIQSPGR MSPRSVEPIS PIGSRLAAFA  600
QREKQHQQLH SLSSRDLGSN NQASIGCSPV NSWAKWGSPN GKLDLLVNGD DMGRLRRSSS  660
FELANNGEEP DLSWVQSLVK ESPTELMKEK LAVSASRAAS SGEGLNSNSQ SESIDHSVLG  720
AWLEQMQLDQ LVV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834432.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_018834433.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2I4FS04	0.0	A0A2I4FS04_JUGRE; zinc finger CCCH domain-containing protein 30-like
STRING	EOX96690	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]