PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013974-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 674aa    MW: 75960.8 Da    PI: 10.2168
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013974-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-09859246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                        + W  +E++ll++avk++G  +W++++ +++       +  t+ +c+++++ 
  WALNUT_00013974-RA  8 QTWGSWEELLLACAVKRHGLTDWDSVSLELQnktslphLFITPTNCQHKYHE 59
                        68*****************************777776666677777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.1E-4663IPR001005SANT/Myb domain
SuperFamilySSF466899.4E-5764IPR009057Homeodomain-like
PfamPF002493.3E-8860IPR001005SANT/Myb domain
CDDcd001674.03E-6961No hitNo description
Gene3DG3DSA:1.20.920.103.9E-13284405IPR001487Bromodomain
SuperFamilySSF473708.11E-16295408IPR001487Bromodomain
SMARTSM002973.6E-11301407IPR001487Bromodomain
CDDcd043698.68E-16308402No hitNo description
PROSITE profilePS5001411.326317388IPR001487Bromodomain
PfamPF004393.3E-9319391IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MLAIPHNQTW GSWEELLLAC AVKRHGLTDW DSVSLELQNK TSLPHLFITP TNCQHKYHEL  60
LRRFNPTNHY LSPPLPNGTA DVDHTIPWLD ELRKIRVSDL KQEVQRYDVS ILSLELKVKR  120
LEEERERERE LSFKDNGISR QGKPDLEDGE ERSENDKKDE PERTGDDSDR DNRSVNESNT  180
TCSKGKDGKE SERMEHKTFN TGSHRADPGF SGSKPVVEHS DDGSSDTVGK NESESVEPTH  240
ERKGGNLSDL PTDSAAQSNG GRTRESSDMQ SSASLTRKRK RKRSQRKEIA SGQEPSEIMD  300
LTAKSQPLVR ILDIIRGHNN NSSLFERRLE SQETDKYNSV VRQHVDFETV ESRLHKGNYS  360
TCTLAFYRDL LLLFNNATLF FPKSSVESIA AHQLRHLVLN EIPKRCDSFP TQNSPTPNTA  420
VFQPKAEPER SHSLLAKPNA SAPIIVCRKR SFISAKSSSS AATVCQKENQ ISDEKKPALD  480
PKTPPIKPST DAAVEDMMKT NAKDKPVTGF RSLRRSNKNP TNNTTSSASS RRQMSTSPNS  540
KTSLANQVET TPKTDKKKKT EALALEKKRS AADFLRRIKR NSPAETLKSG SKEQKRRHIG  600
KGHNRNERVL RQSSNKKHAE EEEEEEEESS PSKRSVGRPP KKLAKANAVS AKRGKESGVK  660
EVVALKRPKK RPRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281RKRKRK
2276282RKRKRKR
3664671LKRPKKRP
4665673KRPKKRPRR
5666672RPKKRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834355.10.0PREDICTED: uncharacterized protein LOC109001499
TrEMBLA0A2I4FRT70.0A0A2I4FRT7_JUGRE; uncharacterized protein LOC109001499
STRINGVIT_13s0156g00340.t011e-162(Vitis vinifera)
STRINGXP_008461248.11e-162(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-78DNA-binding bromodomain-containing protein