PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013941-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 374aa MW: 42078.4 Da PI: 9.8177

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013941-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.2	2.9e-31	76	129	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l++m++kgL+++hvkSHLQ++R+ WALNUT_00013941-RA 76 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQVMNIKGLSIAHVKSHLQMHRS 129 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.962	72	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-29	72	130	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-14	74	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-22	76	131	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	77	128	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MKLGKKELIK MESGSCIGGL KVKSSSDRSD QEEAGSAGDD ESKTKNSASS SNSIVEETEK 60 SGSCIEVRPY VRSKVPRLRW TPDLHRCFVQ AVERLGGQER ATPKLVLQVM NIKGLSIAHV 120 KSHLQMHRSK KVDDQGQVII SRGHLTRSAD HFWQQSMLRS IDQRVSPKYR YGELYWTGQG 180 SCISRSPYFT DDMNLTRGVG LHGSIAERIS GGVDLNMIRN NNIAFEEESS KRLEEFQKEF 240 QWLFNHTSTK TQKSSTPCIE KKPNNIRESN PQWISAERKT GKRKGFHDDN HDLSLSLGIR 300 RPSRQAEASK RSTCWVDEEV DSSLSLSCSS SSKKRNYSID LNMPSKLISR LTEDYNVAKS 360 STATKLASTL DLTL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MKLGKKELIK MESGSCIGGL KVKSSSDRSD QEEAGSAGDD ESKTKNSASS SNSIVEETEK  60
SGSCIEVRPY VRSKVPRLRW TPDLHRCFVQ AVERLGGQER ATPKLVLQVM NIKGLSIAHV  120
KSHLQMHRSK KVDDQGQVII SRGHLTRSAD HFWQQSMLRS IDQRVSPKYR YGELYWTGQG  180
SCISRSPYFT DDMNLTRGVG LHGSIAERIS GGVDLNMIRN NNIAFEEESS KRLEEFQKEF  240
QWLFNHTSTK TQKSSTPCIE KKPNNIRESN PQWISAERKT GKRKGFHDDN HDLSLSLGIR  300
RPSRQAEASK RSTCWVDEEV DSSLSLSCSS SSKKRNYSID LNMPSKLISR LTEDYNVAKS  360
STATKLASTL DLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018819177.1	0.0	PREDICTED: two-component response regulator ARR10-like
TrEMBL	A0A2I4EIF4	0.0	A0A2I4EIF4_JUGRE; two-component response regulator ARR10-like
STRING	POPTR_0009s07890.1	1e-78	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16555	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-43	G2-like family protein