PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013919-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10392.9 Da PI: 9.3517 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+d+ +++G+g +W + +++ g++R++k+c++rw++yl WALNUT_00013919-RA 14 KGPWSPEEDATLKDYLEKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.335 | 9 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-21 | 12 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.9E-20 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.95E-9 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 62 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.054 | 63 | 92 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDATLKDYLE KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPDIRRGS FTEEEDKIIC TLYGSIGSRQ VN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-15 | 14 | 89 | 7 | 80 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018834822.1 | 3e-61 | PREDICTED: transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 4e-53 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A2I4FT60 | 7e-60 | A0A2I4FT60_JUGRE; transcription factor RAX2-like | ||||
STRING | POPTR_0006s25060.1 | 2e-55 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 1e-55 | MYB family protein |
Publications ? help Back to Top | |||
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