PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013918-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 393aa    MW: 43435.7 Da    PI: 7.6086
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013918-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.8e-08142162526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G Ck G+ C FaHg
  WALNUT_00013918-RA 142 ACPDFRK-GNCKKGEACEFAHG 162
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0889126IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5137163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507138164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5141164IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-6142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.836172196IPR000571Zinc finger, CCCH-type
SMARTSM0035627172195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMLGETHRHN QAIHVPPWQL QDNPTADACP PFSLSPLSVT SEGNGNGNGG DYSPYYLQEA  60
LTALQCYLPS NGADIESDSE ILGRESDAPV DAYSCDHFRM FEFKVRRCAR GRSHDWTECP  120
YAHPGEKARR RDPRKYHYSG TACPDFRKGN CKKGEACEFA HGVFECWLHP ARYRTQPCKD  180
GTGCRRRVCF FAHTPEQLRV LPQQSPRSAA SNSVESYDGS PLRQAIEASC AKTRTFLSSP  240
PSISPPGTPP ADSPPMSPMT QPLSRSLGSN SINEMVASLR NLQLGKMKSF PSSRNVPMGS  300
PVFGSPRGSI LRPGFCSMPT TPTQAPTRPG IGYLDFLDQG WEEEPAMERV ESGRDLRAKM  360
FEKLSKENSL ERVDPGPSSN APDLGWVSEL VKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834961.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-140C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2I4FTI10.0A0A2I4FTI1_JUGRE; zinc finger CCCH domain-containing protein 20-like
STRINGcassava4.1_009450m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-136C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]