PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013867-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Protein Properties

Length: 313aa MW: 35107.4 Da PI: 5.641

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013867-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.4	1.5e-19	113	210	1	95
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+l++sdv++++r++lpkk ae+h + ++e++ +++ d++g +W++k++y +++s++yvl+ ++ +Fv+ +gL+ gD ++++l WALNUT_00013867-RA 113 FEKELKNSDVGSLRRMILPKKAAETHlpilE--SKEGIFISMDDLDGlHVWSFKYRYwpNNNSRMYVLE-NTGDFVNTHGLQLGDYIMIYL 200 99************************644..557899****9*****899999999.*******************9 PP -SSSEE..EEE CS B3 85 dgrsefelvvk 95 d+ +++++v++ WALNUT_00013867-RA 201 DD-QNQNYVIR 210 87.55555655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-27	103	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.71E-26	111	213	No hit	No description
SuperFamily	SSF101936	1.86E-21	111	209	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.784	113	215	IPR003340	B3 DNA binding domain
SMART	SM01019	6.2E-19	113	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-16	113	211	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0009733	Biological Process	response to auxin
GO:0010116	Biological Process	positive regulation of abscisic acid biosynthetic process
GO:0010262	Biological Process	somatic embryogenesis
GO:0010373	Biological Process	negative regulation of gibberellin biosynthetic process
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MMKDQQGVPY VKPEAACGLV AAVEAELGLV TVGGDTTTRH GSDLIGATRD LVAAVTSFGV 60 VHRKKRMPRQ RRSSTRKLLS FAPSSSQLPP SPLHSLPTLP AREIDPRRLR FLFEKELKNS 120 DVGSLRRMIL PKKAAETHLP ILESKEGIFI SMDDLDGLHV WSFKYRYWPN NNSRMYVLEN 180 TGDFVNTHGL QLGDYIMIYL DDQNQNYVIR AKKASDDDDQ DVFADHMITS RNNGVNGNYM 240 VLNDYEPSKQ GGNSFYVNYP MVDDTNMSFI YDTTSFSNDS PLDFLGGSST NYSRIGSLEG 300 FGSVENLSLD DFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	2e-61	109	223	1	115	B3 domain-containing transcription factor FUS3
6j9b_D	2e-61	109	223	1	115	B3 domain-containing transcription factor FUS3
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator involved in gene regulation during late embryogenesis. Its expression to the epidermis is sufficient to control foliar organ identity by regulating positively the synthesis abscisic acid (ABA) and negatively gibberellin production. Negatively regulates TTG1 in the embryo. Positively regulates the abundance of the ABI3 protein in the seed. Cooperates with KIN10 to regulate developmental phase transitions and lateral organ development and act both as positive regulators of abscisic acid (ABA) signaling during germination (PubMed:22026387, PubMed:22902692). {ECO:0000269\|PubMed:14675433, ECO:0000269\|PubMed:15363412, ECO:0000269\|PubMed:22026387, ECO:0000269\|PubMed:22902692}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00382	DAP	Transfer from AT3G26790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834818.1	0.0	PREDICTED: B3 domain-containing transcription factor FUS3-like isoform X1
Swissprot	Q9LW31	1e-96	FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBL	A0A2I4FT49	0.0	A0A2I4FT49_JUGRE; B3 domain-containing transcription factor FUS3-like isoform X1
STRING	EOY02917	1e-130	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9858	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26790.1	2e-89	B3 family protein

Publications ? help Back to Top
Yang C, et al. VAL- and AtBMI1-mediated H2Aub initiate the switch from embryonic to postgerminative growth in Arabidopsis. Curr. Biol., 2013. 23(14): p. 1324-9 [PMID:23810531] Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Kim HU, et al. Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues. FEBS Open Bio, 2013. 4: p. 25-32 [PMID:24363987] Rikiishi K,Maekawa M Seed maturation regulators are related to the control of seed dormancy in wheat (Triticum aestivum L.). PLoS ONE, 2014. 9(9): p. e107618 [PMID:25211528] Yamamoto A, et al. Cell-by-cell developmental transition from embryo to post-germination phase revealed by heterochronic gene expression and ER-body formation in Arabidopsis leafy cotyledon mutants. Plant Cell Physiol., 2014. 55(12): p. 2112-25 [PMID:25282558] Shen Y,Devic M,Lepiniec L,Zhou DX Chromodomain, Helicase and DNA-binding CHD1 protein, CHR5, are involved in establishing active chromatin state of seed maturation genes. Plant Biotechnol. J., 2015. 13(6): p. 811-20 [PMID:25581843] Chen M, et al. TRANSPARENT TESTA GLABRA1 Regulates the Accumulation of Seed Storage Reserves in Arabidopsis. Plant Physiol., 2015. 169(1): p. 391-402 [PMID:26152712] Schneider A, et al. Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos. Plant J., 2016. 85(2): p. 305-19 [PMID:26678037] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhang M,Cao X,Jia Q,Ohlrogge J FUSCA3 activates triacylglycerol accumulation in Arabidopsis seedlings and tobacco BY2 cells. Plant J., 2016. 88(1): p. 95-107 [PMID:27288837] Fatihi A, et al. Deciphering and modifying LAFL transcriptional regulatory network in seed for improving yield and quality of storage compounds. Plant Sci., 2016. 250: p. 198-204 [PMID:27457996] Chiu RS,Pan S,Zhao R,Gazzarrini S ABA-dependent inhibition of the ubiquitin proteasome system during germination at high temperature in Arabidopsis. Plant J., 2016. 88(5): p. 749-761 [PMID:27496613] Tang LP, et al. FUSCA3 interacting with LEAFY COTYLEDON2 controls lateral root formation through regulating YUCCA4 gene expression in Arabidopsis thaliana. New Phytol., 2017. 213(4): p. 1740-1754 [PMID:27878992] Duong S,Vonapartis E,Li CY,Patel S,Gazzarrini S The E3 ligase ABI3-INTERACTING PROTEIN2 negatively regulates FUSCA3 and plays a role in cotyledon development in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1555-1567 [PMID:28369580] Han JD, et al. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Front Plant Sci, 2017. 8: p. 439 [PMID:28421087] Sun F, et al. Functional Characterization of TaFUSCA3, a B3-Superfamily Transcription Factor Gene in the Wheat. Front Plant Sci, 2017. 8: p. 1133 [PMID:28702045] Horstman A, et al. The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis. Plant Physiol., 2017. 175(2): p. 848-857 [PMID:28830937] Chan A, et al. SnRK1 phosphorylation of FUSCA3 positively regulates embryogenesis, seed yield, and plant growth at high temperature in Arabidopsis. J. Exp. Bot., 2017. 68(15): p. 4219-4231 [PMID:28922765] Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824] Hanano A,Almousally I,Shaban M,Murphy DJ Arabidopsis plants exposed to dioxin result in a WRINKLED seed phenotype due to 20S proteasomal degradation of WRI1. J. Exp. Bot., 2018. 69(7): p. 1781-1794 [PMID:29394403] Chen N,Veerappan V,Abdelmageed H,Kang M,Allen RD HSI2/VAL1 Silences AGL15 to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis. Plant Cell, 2018. 30(3): p. 600-619 [PMID:29475938]