PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013833-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 363aa    MW: 41321.2 Da    PI: 6.4434
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013833-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.3e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
  WALNUT_00013833-RA 14 KGPWTPEEDQKLLDYIQKHGYGNWRTLPKNAGLERCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding52.51.1e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  WALNUT_00013833-RA  67 RGRFSFEEEETIIQLHGILGNK-WSAIASRLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.676965IPR017930Myb domain
SuperFamilySSF466894.4E-3211108IPR009057Homeodomain-like
SMARTSM007172.3E-141363IPR001005SANT/Myb domain
PfamPF002498.5E-171461IPR001005SANT/Myb domain
CDDcd001671.27E-121661No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2665116IPR009057Homeodomain-like
SMARTSM007174.2E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129419.90866116IPR017930Myb domain
PfamPF002495.8E-1567111IPR001005SANT/Myb domain
CDDcd001671.37E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRAPCSEKN SLKKGPWTPE EDQKLLDYIQ KHGYGNWRTL PKNAGLERCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHGILGNKWS AIASRLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPITHSPRL NLLELSSILS SSLCSSSQIH IMSSRFLDVQ SLVNHDPDLL RLAKSLMSSS  180
PETPNLVLQN LHENQLCSSQ KQNQIAQIVQ RNHELQEPVQ EIPPCNKFSF QSDQAQVGLE  240
PKVDLFTSSF TDFSSSNSQP TEWQSNGMPA DFTEDYVPLP SYYHGSDHHQ TMMDPSSESS  300
TFHSNNSNQN FSFTPSSSPT PLNSNSTYII NSSTEDESCR EISHCTNMLK FEIPDILDML  360
INS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815706.10.0PREDICTED: myb-related protein 315-like
SwissprotQ9LDR81e-104MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2I4E8I30.0A0A2I4E8I3_JUGRE; myb-related protein 315-like
STRINGVIT_00s0203g00070.t011e-159(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-88MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]